Gene detail

Detailed information of g30169.t1 in Acropora digitifera

Genomic Location: chr14Alt:13218771...13226532
NR annotation: XP_015755322.1, PREDICTED: synaptotagmin-16-like isoform X3 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr14Alt.g30169.t1

GATTTTCAACCTTCTGTCGCGGCCGGGGCGTAACAGTTAGCAACATGTCGAAACCTTAGCGATTTTGTTCGTTTGTATTTCACGGCCTTTTCAAGGCCAATATGGGGTTGCCAACCCCGGCCATCGTATTTATGGCTGTTATCGGCGGCTGTTGCCTTCTCTTGTTAATCTTATACCAGTGTTTGAAGGCTGGGATGTTTTTTAAGACCGAACCACCGGCTGATTCACTCGAAGAGAAAGGTGGTTACGCAGAACTCGGCGATACGTACGGCACCGAGACAGATGACGACTATGTGGGGCCATCTTCGAAAGCAACAAGCCGAAGAAGTAGCTTTAATACAAGTGGGAGCAAGTCGGATGGTGAGCTGGCCTTGGGCGATAGTGCATCAGTTTATGGCTATGGTAAATATTCGGATGGAGAATACAGCCCAAGCAGCGGGCGCGCTTTGTCTGCTTATGGAGAAGCTATTGATATCAGCCAAGAGGAATTTCTTTCAACGGCAGGAAGACTACAAGTGTCAGCAAGTTATGCCCCAACAGCGCAAAAACTTGCTGTAACTGTTCTCCGTGCTGAAGATATTCCGACCAAGCACAGAGGAGGTGCTGCCAGCGTTCAAGTTCGTGTTGTGTTGTTACCAGCAAAGAAGCAGCGTTTTAAAACAAAAACTAAACCATCAACTAATCCGAACTTTCATGAAACCTTTACTTTTAGTCGTGTTTCTCAAAGTGATTTGCAAGAAAGTGGTTTAAGATTCAGACTGTATGGCCACGAAAAACTGACTAGGGATAAACTGCTTGGTGAATTGACAATAAACGTCACAGAATTCGACTTAGAAGGCGACGGAGAGGCACTATGGCGCACTCTTACCCCAAGAAGTGCACTTAGCGCTTCAGATTCCATGTACGATTTGTCAGATACAGCAAGCGTCAAAAGTCACGGATCTTATGGGTCAGTTTCTTCCCTTGCCATGGCGCCCAGCGGTGCACCTGAATTGCTGGTCTCACTCTGTTACCAGTCCCTCACTGGAAGATTAACAGTGGAAGTACTGAAAGCAAGCAACTTGAGAAATGTTGCAATGCAACGTGCTCCAGATTCATACGTGAAAGTGACTTTATTGTCATCATCTGGCAAGCAAGTTGCAAAAAGTAAAACTACCATTAGGAAGAGCATGGCAGATCCAGAATACAATGAGAGTTTCATATTTGAAATATCAGAGACAGATCTGCATCGGGTCACGTTGAGTGTAGCAGTTATTGCTATATCAAGGGCAAGGAAGAAAAAGGAGATGATTGATACCTATGTGAAAGTTGCCATGTTTAACTCCATAGGACAGCAATTATCAAAGAGCAAAACATCAATACGCCGCAGTATGTGTGATCCCGAATATAACGAGAACTTTGTGTTCCAGATTATTGAATTTGAACTACCAAGTGTTAGCCTTATGTTTTCGGTTGTTAACATAAAAAAAATGAGGCGAAAGGAGATTATCGGTTGGTTCTCTATGGGACGGGATAACACTGGAGAAGATGAAGAGGCACATTGGAAAGAAATGATCGAAGCAAAGGGACAACCTAGAAAAAGATGGCACATATTAAGTGCTGTGGATTATTGAAACTAATATAACCTAACTGTATTTTGTTCGCTAAAATTGAATTATTTGTAAAGAAAGGCGTCATATATTCAATATTTATTTATTAGATTGATATATTTCCGAGTCCATTTTTAAATGAAAGTCAATTAGTTTGGAGTGGCCGGATTTCTTTGCAATAGAGTTATGTTGCGTGAAAGGTAATTTATTTTTGAGCATTTTTTTACGTCACTGAGAATCATGATTACTTTTATGGACACTATTATTATAATTTGTCACTTCACATGGTCTTCAAACAAGCGACGACTGACTCGTAGACCTCACAGCATTCAATGAAAGCAAAGAATTTTTTACATTGCATGCGCTTCTGTTTTCGAATAAGGTTTATAATTTTTCATTGTCTCATTCTTTTTCATTTTCGTTTTGGTTAAAGTTAACATTTTGGTTAAAACGATTGCGCATCTGTAGGTTTTAACGTCATTCACGGAAAAACTTGCACAAACTCTGTGGCCAAAGAATTTTTAACTTGTTTCTTAATTAGGAAAGAAAAGTTCGATGGAAAAAAAACCTAACAACAACAAGCAAAGAAAAAGGAATGCCGTGTTATGCCTTTTATCTTCATTGGTCTCTGAAACAAGTTTTGTTTTTAGCCAGCTAACTTTGGTTAAATAGACTGTTGAGTTAATAAACTGTTGGCGATTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TN83	Synaptotagmin-16 OS=Mus musculus OX=10090 GN=Syt16 PE=1 SV=1
Q17RD7	Synaptotagmin-16 OS=Homo sapiens OX=9606 GN=SYT16 PE=1 SV=2
Q8NB59	Synaptotagmin-14 OS=Homo sapiens OX=9606 GN=SYT14 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR043541 all species →	Family	Synaptotagmin-14/14L/16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46129 all species →	SYNAPTOTAGMIN 14, ISOFORM D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19328	SYT14_16; synaptotagmin-14/16	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.