Gene detail

Detailed information of g303.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_002157390.1, hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16836	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=HADH PE=1 SV=3
P00348	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HADH PE=1 SV=2
Q9WVK7	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hadh PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000030 (this species only)
Orthogroup (gene family)	OG0000095 (this species only)
Orthogroup (gene family)	OG0000270 (this species only)
Orthogroup (gene family)	OG0001182 (this species only)
Orthogroup (gene family)	OG0001903 (this species only)
Orthogroup (gene family)	OG0002400 (this species only)
Orthogroup (gene family)	OG0003120 (this species only)
Orthogroup (gene family)	OG0003132 (this species only)
Orthogroup (gene family)	OG0003470 (this species only)
Orthogroup (gene family)	OG0004654 (this species only)
Orthogroup (gene family)	OG0012038 (this species only)
Orthogroup (gene family)	OG0059761 (this species only)
Orthogroup (gene family)	OG0080564 (this species only)
Orthogroup (gene family)	OG0171082 (this species only)
Orthogroup (gene family)	OG0172885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF02434 all species →	Fringe	Fringe-like	Family	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF04087 all species →	DUF389	Domain of unknown function (DUF389)	Family	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF12001 all species →	DUF3496	Domain of unknown function (DUF3496)	Family	Interproscan
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00725 all species →	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00354 all species →	Pentaxin	Pentaxin family	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF02696 all species →	SelO	Protein adenylyltransferase SelO	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR051336 all species →	Family	Rho GTPase-activating Guanine Nucleotide Exchange Factors	Interproscan
IPR003378 all species →	Domain	Fringe-like, glycosyltransferase domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR005240 all species →	Family	Protein of unknown function DUF389	Interproscan
IPR001442 all species →	Domain	Collagen IV, non-collagenous	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR021885 all species →	Domain	Domain of unknown function DUF3496	Interproscan
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR006108 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR006180 all species →	Conserved_site	3-hydroxyacyl-CoA dehydrogenase, conserved site	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR022694 all species →	Family	3-hydroxyacyl-CoA dehydrogenase	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR052242 all species →	Family	Mitochondrial 3-hydroxyacyl-CoA dehydrogenase	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR018488 all species →	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR043533 all species →	Family	Cyclic nucleotide-binding domain-containing protein 1/2	Interproscan
IPR050906 all species →	Family	Notch signaling pathway	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR001759 all species →	Family	Pentraxin-related	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR003846 all species →	Family	Protein adenylyltransferase SelO	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22826 all species →	RHO GUANINE EXCHANGE FACTOR-RELATED	Interproscan
PTHR12916 all species →	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan
PTHR20992 all species →	UNCHARACTERIZED	Interproscan
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan
PTHR43561 all species →	-	Interproscan
PTHR23011 all species →	UNCHARACTERIZED	Interproscan
PTHR24044 all species →	NOTCH LIGAND FAMILY MEMBER	Interproscan
PTHR12153 all species →	SELENOPROTEIN O	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005201 all species →	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005581 all species →	Cellular Component	collagen trimer	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0003857 all species →	Molecular Function	3-hydroxyacyl-CoA dehydrogenase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00022	HADH; 3-hydroxyacyl-CoA dehydrogenase	EC:1.1.1.35	Caprolactam degradation	ko00930	deepkoala
K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.