Detailed information of g303.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002157390.1, hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q16836Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=HADH PE=1 SV=3
P00348Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HADH PE=1 SV=2
Q9WVK7Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hadh PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00621RhoGEFRhoGEF domainDomainInterproscan
PF02434FringeFringe-likeFamilyInterproscan
PF00008EGFEGF-like domainDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF04087DUF389Domain of unknown function (DUF389) FamilyInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF12001DUF3496Domain of unknown function (DUF3496)FamilyInterproscan
PF027373HCDH_N3-hydroxyacyl-CoA dehydrogenase, NAD binding domainDomainInterproscan
PF007253HCDH3-hydroxyacyl-CoA dehydrogenase, C-terminal domainDomainInterproscan
PF00027cNMP_bindingCyclic nucleotide-binding domainDomainInterproscan
PF00354PentaxinPentaxin familyDomainInterproscan
PF00754F5_F8_type_CF5/8 type C domainDomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF07699Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan
PF02696SelOProtein adenylyltransferase SelOFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000219DomainDbl homology (DH) domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR035899Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR051336FamilyRho GTPase-activating Guanine Nucleotide Exchange FactorsInterproscan
IPR003378DomainFringe-like, glycosyltransferase domainInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR005240FamilyProtein of unknown function DUF389Interproscan
IPR001442DomainCollagen IV, non-collagenousInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR021885DomainDomain of unknown function DUF3496Interproscan
IPR006176Domain3-hydroxyacyl-CoA dehydrogenase, NAD bindingInterproscan
IPR013328Homologous_superfamily6-phosphogluconate dehydrogenase, domain 2Interproscan
IPR006108Domain3-hydroxyacyl-CoA dehydrogenase, C-terminalInterproscan
IPR006180Conserved_site3-hydroxyacyl-CoA dehydrogenase, conserved siteInterproscan
IPR008927Homologous_superfamily6-phosphogluconate dehydrogenase-like, C-terminal domain superfamilyInterproscan
IPR022694Family3-hydroxyacyl-CoA dehydrogenaseInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR052242FamilyMitochondrial 3-hydroxyacyl-CoA dehydrogenaseInterproscan
IPR000595DomainCyclic nucleotide-binding domainInterproscan
IPR018490Homologous_superfamilyCyclic nucleotide-binding domain superfamilyInterproscan
IPR018488Conserved_siteCyclic nucleotide-binding, conserved siteInterproscan
IPR014710Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR043533FamilyCyclic nucleotide-binding domain-containing protein 1/2Interproscan
IPR050906FamilyNotch signaling pathwayInterproscan
IPR000421DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR001759FamilyPentraxin-relatedInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR011641DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR003609DomainPAN/Apple domainInterproscan
IPR003846FamilyProtein adenylyltransferase SelOInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22826RHO GUANINE EXCHANGE FACTOR-RELATEDInterproscan
PTHR12916CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2Interproscan
PTHR20992UNCHARACTERIZEDInterproscan
PTHR24023COLLAGEN ALPHAInterproscan
PTHR43561-Interproscan
PTHR23011UNCHARACTERIZEDInterproscan
PTHR24044NOTCH LIGAND FAMILY MEMBERInterproscan
PTHR12153SELENOPROTEIN OInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0019898Cellular Componentextrinsic component of membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016757Molecular Functionglycosyltransferase activityInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0006631Biological Processfatty acid metabolic processInterproscan
GO:0070403Molecular FunctionNAD+ bindingInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0003857Molecular Function3-hydroxyacyl-CoA dehydrogenase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006635Biological Processfatty acid beta-oxidationInterproscan
GO:0005112Molecular FunctionNotch bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19721COL5AS; collagen type V/XI/XXIV/XXVII, alpha-Caprolactam degradationko00930deepkoala
Glycosaminoglycan binding proteinsko00536deepkoala

TOP