Gene detail

Detailed information of g30372.t1.1 in Dendrophyllia cribrosa

Genomic Location: not available for this species
NR annotation: KAJ7323151.1, CCR4-NOT transcription complex subunit 10 [Desmophyllum pertusum]
Species abbreviation DCRIB · all data for this species · gene families

Sequence

CDS

g30372.t1

ATGAAGATGGGTGATGTTCATTGTGCGACAAAAGATAGCTCCCAGATGCTTTCCACCATTGAATATGTACAGCTCAGGATGTCAGAAAATCCAATTGATAGCATTGATGCCCAGACAGAGACCATTCCTAGAGTTGGAGTCACTGATGCTGAGCGAGAACTTGCTAACAATGCTCATGTTGAGTTTGAGAGTAAACAGTTTGATAGATGTTTGTCATCACTAAACAAGCTCTTGGAACTGAGAAAGAATGACCCAAAAGTTCAACACAACAAAACAGTAGCACACTTCTACCATTCCAATTGCACTGGAACTGAAGAATGTGGCAGAAATTTATTCAAGATAAGAAAACAAATTGAAAAAGAAAGTAGTCAAACTGGTGAAGATATAGATGACATTGACACAGCTTACCTTCTGTACAATGAGTCTGTTATTTACTTTCATTTACGGCAGTACACCAAGGCATTATTTATTGTGGAAAGACTGTTTAAAATTGTTGAACCTCTTGaGGAAACCCTTGGATGTAAGATCTGCTTCTTGCTCAGTGAAATTTATCTGACTCTTTACAAGGCAGACAAAGCTCATAATGTGCTGACAGTGTTAGAAAACTTGGTATTTGGATCAAGTAAGCCAGTGGAGTCGCAGATGATTCAAGGTGGATTACAAGCACAGCTTGGACCAGGCAGCCAGTCAGCACCACAGCCCATCAAGGAAGTTGATGAATCTTTAAAACTCAACTTTCATCAGCATAAAGCTCGACTGAATATTCTGTTGAAATCAATGAAAGCTTGTAAACGAGAGGTCAAAACTGTTCTTAACACAAACAATATGtcTCCAGAGGGTCTCTTTCTCAAAAGCAACTTTGAGTACCTCCGCCAGAACTTCCGCAAGTCCATCAAGCTATTGAACAGTGCACCAAAACCAAATAATGTTACAGAGGGAGGACAGTCTGTCAGCACAATGTACTATAATGACCTGGGATGCATTCATTTTCAACTTCACAAGTACAACTTGGCAGCCTTCTACTTCAGAAAGGCTTTACAGGAAAATAACAAAGCTCTTTCCTCACTACCTCCTGTTGACAAGAATGCTCCTGTGTCCAGTCGCTCGCTGGTGACTCTTGGTGTCAGCCATCGTCATGAGATTCTGTACAATCTGGGAATTCAGCTGCTGTTTTCTGGTCGACCTGCTGCAGCATTTGATTGCCTGGTCGAAGCTGTACAAATTTACCACACCAACCCTCGCCTCTGGCTTAGGTTAGCGGAGTGCTGCATTGTAGCATTTCAGCTGGCTGATGACTTTCGACAGCAGTGCATCAAGAAGAGTGATGTTGTTCATGATGTTGTTGGTTCAGGGCCACATCGCAAGATTGTGCTGTCCCCTCAGACTGACAAACAGTGTAGTACAGAGGACAGTAAAAGTCAGTCAGCTGCTATGCCAGCCTGTACCCTGGCATTTGCTTCGCTGTGTCTTCAAAATGCTCTGATGCTGCTCAAAGGTGCAGAGGTGTCTTCTGTTCATGAACCGGAGAGTGTACTGGAGAGTCAATTGAACAAGGAGGATGATTCACTTAGCAGCCAAGAAACAGACGCATCAAGTGACAGTGGAGGATTTAGTCGATCCTCATCAATACAAAGTGAAACAAGTATTCCAGCTCCCCCTGGGCCTCCTGTTAAACTTCGCGAGCTTCCACACCTCAGGTGTTCGATTCTATCCTGCAGTGCTTATGTAGCCCTGGGTTTGGGAGACAATGTGATGGCTTTAGCTCATGCACAGAGACTGCTGTCCCAATCAAACCTTGTTGGCGGGCTCAAgtTCCTTGGTCATTTGTATGCTGCTGAAGCTCTGGTTAAATTGAATCGTTTGCCTGAAGCTATTATGCACTTATCTACAGAGAATATCAACAATATAACAATCACTCCACCCTGCAATACAGCAGTTGTTTCAAGTGATAATgctgaaaaggaaaaagaatCTTCTAAACCTCATGCTTGTGAGAAGATGTACTTTCCCCAGTCTTTGAGTGAAGCACGAGCGTCATTTCTTGTTAATCTAGCCGGAGTGTACAGTTTACGCAGTGAATTTGACAAGGCACGCAAGTGTTTACAACAGGCATGTACCCAAGGTTACTCACAGGAATTGTCTGCCCGAGTGGTGTTATTGGCTGTGTACATAGAGCTACAGAGTGGTAACATCACTAGTGCACTGCAGACGATAAAAAAGCACCAAGTTCTTCCCGTAAACAAAGGATTTAAAGCCGCCAAGAAGACACGGGGAGCGGACATCTGGAAATCATGA

Transcript

g30372.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H9A5	CCR4-NOT transcription complex subunit 10 OS=Homo sapiens OX=9606 GN=CNOT10 PE=1 SV=1
A4IFB6	CCR4-NOT transcription complex subunit 10 OS=Bos taurus OX=9913 GN=CNOT10 PE=2 SV=1
Q5XIA4	CCR4-NOT transcription complex subunit 10 OS=Rattus norvegicus OX=10116 GN=Cnot10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005855 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR039740 all species →	Family	CCR4-NOT transcription complex subunit 10	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12979 all species →	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12607	CNOT10; CCR4-NOT transcription complex subunit 10	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.