Gene detail

Detailed information of g30489.t1 in Acropora digitifera

Genomic Location: chr14Alt:19867326...19877206
NR annotation: XP_029187362.2, WD repeat-containing protein 74-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58D06	WD repeat-containing protein 74 OS=Bos taurus OX=9913 GN=WDR74 PE=2 SV=1
Q6RFH5	WD repeat-containing protein 74 OS=Homo sapiens OX=9606 GN=WDR74 PE=1 SV=1
Q8VCG3	WD repeat-containing protein 74 OS=Mus musculus OX=10090 GN=Wdr74 PE=2 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for g30489.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037379 all species →	Family	WDR74/Nsa1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16038 all species →	NOP SEVEN ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14841	NSA1, WDR74; ribosome biogenesis protein NSA1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g30489.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

25.9Max TPM

17.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	17.33	25.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	25.94
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	22.61
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	21.61
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	20.91
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	20.91
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	20.31
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	19.87
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	19.65
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	19.41
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	19.03
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	18.92
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	18.90
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	18.80
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	18.44
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	18.12
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	17.77
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	17.48
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	17.30
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	17.27
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	17.26
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	17.15
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	17.04
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	16.64
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	16.47
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	16.06
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	15.96
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	15.89
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	15.56
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	15.25
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	15.25
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	14.99
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	14.79
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	14.48
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	14.44
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	14.06
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	13.87
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	12.89
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	12.73
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	11.86

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.