Genomic Location: chr14Alt:20149741...20174376
NR annotation: XP_044163241.1, pecanex-like protein 1 isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families
| CDS |
| g30509.t2 |
| Transcript |
| chr14Alt.g30509.t2 |
| Protein |
| chr14Alt.g30509.t2 |
| UniProt accession | Description |
|---|---|
| Q98UF7 | Pecanex-like protein 1 OS=Takifugu rubripes OX=31033 GN=pcnx1 PE=3 SV=1 |
| E9PSU6 | Pecanex-like protein 1 OS=Rattus norvegicus OX=10116 GN=Pcnx1 PE=1 SV=1 |
| Q9QYC1 | Pecanex-like protein 1 OS=Mus musculus OX=10090 GN=Pcnx1 PE=1 SV=3 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05041 all species → | Pecanex_C | Pecanex protein (C-terminus) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007735 all species → | Domain | Pecanex, C-terminal | Interproscan |
| IPR039797 all species → | Family | Protein Pecanex | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12372 all species → | PECANEX | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
g30509.t2.Transcript abundance of g30509.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Coral branch | 39 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM,
StringTie quantification over 39 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.