Gene detail

Detailed information of g30541.t1 in Acropora digitifera

Genomic Location: chr14Alt:20533972...20537290
NR annotation: XP_015763874.1, PREDICTED: methionine synthase reductase-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g30541.t1

ATGCCTGTAAACAGGTCTTCATCAAACATATTTACAATTCTATATGGATCACAAACAGGCCAAGCGAAGGCCATCTCTGAAGAAATACACGAGTTATCAGACCAGCATGGTCTTAACTCGAATCTGTTTTGCCTCAGCCTCACCGAGAAAAAGTTCACCTTGGAAAAAGAATCACTAGTCGTGTTCGTAGTGTCTACAACTGGGGAAGGAGATCCTCCTGATACCATGTGTAAGTTTATGAGAAGACTTAAGAAGAAGACTCTTCCTGGAACACACCTAGAAAACTTACGTTATGCGCTTCTTGCTTTGGGTGATACCAACTACACTAACTTCTGCAATAATGGTAAAGAGTTGGACAAGAGGTTACTGCAGCTGGGAGCAAGGAAGTTTTATGAGACTGGATATGCTGACGATGCTGTTGGTTTGGAGCTTACTGTCGAACCATGGATAGAAGGGCTTTGGCCAGCGCTTCAGAGGCATTTAGGCTTATCCTCAGAGGAGGTATGTCAGTCGGACAGTGTCAAAGGTTTAATTGGACTGAGAAACAACTGTGCAGATCTTATTAACAATGGCAATAGTTCATCATTAGAAGAAAGCCATGATGAAGTCACAGAAGAGAGCATGCGGGCAGGAGAAAGGACTGCACAAGTTGAGATTAGGTTTTTGAAAGACACAGCCACCAATGGAATGAGCAAATCTTTGGAAGAAACAAGTGATGCAATTGTGTCCAAAGGTGGCAATGGTGTTTCTGAATCAACTACCAAAGATAAAAATAGTGTCGCACATGTTTTTCAGACATTCAGTGACAACAAAGAGAATATCAAATCAAGTCCAACAAAGGACGTTGACTCTCTGAATGATCAGAGCACATCAGCAGTTAGACCTGACTTGTCTGGACAGTGTAACTCACTTCAAAGTTCACCGCTCACTCTTGGAGACCAGCTGAAGATGCCTTCACCTTCTCTGTCTTCCACTTCTTTGTCAATACCACAACTGCCAGTTGCTTATTTAGATATCACTTTTCATCCTGACCACAAACTGGATTTTTTTTCATTACCTTTGCACAATAATGCCAGCTTTCCAAGTGCAATATCTGGTGTTTCAATGGCAAAGGTATCATCAGCAAAACAGCTGACATCTAACTCCGCTGTTAAAACAGCACTGGACATCGAACTTGACATAACAGATTGCGACATGATTTATGAGCCTGGTGACTCATTTGGAATCGTATGTCCAAATTCCAATGCTGAGGTTGAAGAATTAATAACTAAATTAGGATTGAATGAAAAAGCAGACACGCCTTTCTCCATTCAATTGAGAACCTCCACATCCAAGAAGTCAGCTAGTGTTCCAAACTACATTCCAGAGATTTCAGTTATCAGGCATACCTTTCTGACCTGTTTGGAGATCCGTGCCGTTCCAAGCAAAGCTCTTATAAGAGTCTTATCAGAACACACAAGTGATCTTCAACAGAAAAGAAGACTTCAAGAACTATGCAGCAAACAAGGTACAAACGAGTACACCAAGTTTGTTAGAGAACCTAGTTTATCCTTGCTGGATCTTCTAAATGCTTTTCCTTCTTGTCAGCCTCCGTTTGTAAGGTTACTTGAGTTGATGCCACGGTTGAAGGCACGACTGTATTCAGTATCAAGTTCTCCACTGGAAGATCCCCTTCATCTTCATTTTGTGTTTAACGTTGTTGAGTTCCCTGCTATTGGAGGCATAAGGGAACAACGTCAAGGTGTCTGTACTGGTTGGCTCAACAATATCGCTAGAAGTCAAGGGAAAAGCATGACTGGGGACAGCAAGGCACCAATTGATGCCTTCTCAAAGTTGAGTTTAGAGGAGTTTGTCAACGTCCCTGTCTTCCGAAGAAAGAACCTCAACTTCAAATTGCCAAGTAACCCAAAGACCCCAATCATTATGATAGGCCCTGGCACAGGTGTGGCACCTTTTATAGGCTTTTTAAAGCACAGAGAACTCAAGAAGAAGAAATTGGGCTTGGATACTTCACTATCTGATGCATGGCTATTTTTTGGCTGCAGACACAAGGAAAGAGACTACCTCTACCAACAAGAACTCAAGCAGTTTTTGTCTAGTGGTGTGTTGTCACATCTTTGCGTGTCCTTTTCTCGTGACCCAGTTGATGAGTTACAAAACAGTCCCTGTCCAAAGTATGTGCAAGATAACCTAAGGCGCCATTCCATTGAGGTGGCTCAGCTGGTGTTTGAAAAAGGGGCAGTGGTCTACATATGCGGGGATGCTAACAATATGGCAAGAAACGTTTATGATACTTTCCTGGAGATTGTGAAAGAATACAAGGCTATTGATATCACTGAAGCAAGGAAAGAATTGATGAAATTGCGTGAAAACAAGCAATACCTTGAGGACATTTGGACATAA

Transcript

chr14Alt.g30541.t1

ATGTAAGATTCAGGTACACCGAATTCTTCAATATTTTTCGTCCTTCTTTTTACCTTTGGAGCAAACTGAAGACCAGATTAATCATTATGCCTGTAAACAGGTCTTCATCAAACATATTTACAATTCTATATGGATCACAAACAGGCCAAGCGAAGGCCATCTCTGAAGAAATACACGAGTTATCAGACCAGCATGGTCTTAACTCGAATCTGTTTTGCCTCAGCCTCACCGAGAAAAAGTTCACCTTGGAAAAAGAATCACTAGTCGTGTTCGTAGTGTCTACAACTGGGGAAGGAGATCCTCCTGATACCATGTGTAAGTTTATGAGAAGACTTAAGAAGAAGACTCTTCCTGGAACACACCTAGAAAACTTACGTTATGCGCTTCTTGCTTTGGGTGATACCAACTACACTAACTTCTGCAATAATGGTAAAGAGTTGGACAAGAGGTTACTGCAGCTGGGAGCAAGGAAGTTTTATGAGACTGGATATGCTGACGATGCTGTTGGTTTGGAGCTTACTGTCGAACCATGGATAGAAGGGCTTTGGCCAGCGCTTCAGAGGCATTTAGGCTTATCCTCAGAGGAGGTATGTCAGTCGGACAGTGTCAAAGGTTTAATTGGACTGAGAAACAACTGTGCAGATCTTATTAACAATGGCAATAGTTCATCATTAGAAGAAAGCCATGATGAAGTCACAGAAGAGAGCATGCGGGCAGGAGAAAGGACTGCACAAGTTGAGATTAGGTTTTTGAAAGACACAGCCACCAATGGAATGAGCAAATCTTTGGAAGAAACAAGTGATGCAATTGTGTCCAAAGGTGGCAATGGTGTTTCTGAATCAACTACCAAAGATAAAAATAGTGTCGCACATGTTTTTCAGACATTCAGTGACAACAAAGAGAATATCAAATCAAGTCCAACAAAGGACGTTGACTCTCTGAATGATCAGAGCACATCAGCAGTTAGACCTGACTTGTCTGGACAGTGTAACTCACTTCAAAGTTCACCGCTCACTCTTGGAGACCAGCTGAAGATGCCTTCACCTTCTCTGTCTTCCACTTCTTTGTCAATACCACAACTGCCAGTTGCTTATTTAGATATCACTTTTCATCCTGACCACAAACTGGATTTTTTTTCATTACCTTTGCACAATAATGCCAGCTTTCCAAGTGCAATATCTGGTGTTTCAATGGCAAAGGTATCATCAGCAAAACAGCTGACATCTAACTCCGCTGTTAAAACAGCACTGGACATCGAACTTGACATAACAGATTGCGACATGATTTATGAGCCTGGTGACTCATTTGGAATCGTATGTCCAAATTCCAATGCTGAGGTTGAAGAATTAATAACTAAATTAGGATTGAATGAAAAAGCAGACACGCCTTTCTCCATTCAATTGAGAACCTCCACATCCAAGAAGTCAGCTAGTGTTCCAAACTACATTCCAGAGATTTCAGTTATCAGGCATACCTTTCTGACCTGTTTGGAGATCCGTGCCGTTCCAAGCAAAGCTCTTATAAGAGTCTTATCAGAACACACAAGTGATCTTCAACAGAAAAGAAGACTTCAAGAACTATGCAGCAAACAAGGTACAAACGAGTACACCAAGTTTGTTAGAGAACCTAGTTTATCCTTGCTGGATCTTCTAAATGCTTTTCCTTCTTGTCAGCCTCCGTTTGTAAGGTTACTTGAGTTGATGCCACGGTTGAAGGCACGACTGTATTCAGTATCAAGTTCTCCACTGGAAGATCCCCTTCATCTTCATTTTGTGTTTAACGTTGTTGAGTTCCCTGCTATTGGAGGCATAAGGGAACAACGTCAAGGTGTCTGTACTGGTTGGCTCAACAATATCGCTAGAAGTCAAGGGAAAAGCATGACTGGGGACAGCAAGGCACCAATTGATGCCTTCTCAAAGTTGAGTTTAGAGGAGTTTGTCAACGTCCCTGTCTTCCGAAGAAAGAACCTCAACTTCAAATTGCCAAGTAACCCAAAGACCCCAATCATTATGATAGGCCCTGGCACAGGTGTGGCACCTTTTATAGGCTTTTTAAAGCACAGAGAACTCAAGAAGAAGAAATTGGGCTTGGATACTTCACTATCTGATGCATGGCTATTTTTTGGCTGCAGACACAAGGAAAGAGACTACCTCTACCAACAAGAACTCAAGCAGTTTTTGTCTAGTGGTGTGTTGTCACATCTTTGCGTGTCCTTTTCTCGTGACCCAGTTGATGAGTTACAAAACAGTCCCTGTCCAAAGTATGTGCAAGATAACCTAAGGCGCCATTCCATTGAGGTGGCTCAGCTGGTGTTTGAAAAAGGGGCAGTGGTCTACATATGCGGGGATGCTAACAATATGGCAAGAAACGTTTATGATACTTTCCTGGAGATTGTGAAAGAATACAAGGCTATTGATATCACTGAAGCAAGGAAAGAATTGATGAAATTGCGTGAAAACAAGCAATACCTTGAGGACATTTGGACATAAATAAGGCTTGAAATACAGTAATCAAAAGTTTCAGTTTGCTATGTGGTACGCAGCGCATCTTGGGACAGAAAGTGATCACCAAGTCTTGAAGTGCTGCCATATCTTTGTCTCCTGTATGCGAATAATTTATGGTTATTAGTTGATACTAAATTCCCATATTCGCGTAAAAGGATACAAGATGAAGAGGGAAAACAACCCAATGGAGACTTGGTGCTCACTTTCTGTCCCACAGTGTGCAGTGTCCAACAAAGGAAACTCAAACTCTTGATGCCTGCGTGATCAAAATTTTGAAATGCAAAAAAACAGGATGGTGGAACATTTTGGACATTAAAAAGGTTGTTTGCAATGCAGGTTTTATGATATGTGGAAGATGACCAAGAACACTAAAAGTTAATGTTATTGTAATAAGGCTATTATATTAAATTTGACAAAGAGTCTTTTTTTAATATTGTTAAGCAAGACTTTTGGGGTTTTCTAAAATTTAAGTTTATTTACAATAGAAAAAATAGCCAATGCTTATTGAATTGATTGAAATAGCACAAGCTATCTTAATTGTCAGAAACTGCAGTAAAGTGCTTACAAACAATTAAAAATTAATAAGTGAGTGATGCATCCTGTTCCATATTATGGGTTCTCGACTTCTGTCATCATTGAGATTATGTCAGCAGCCACAACTTCTTACAATATCCTTAATTTTGTTTCTTTTTATTTTCTTACTTTAATGTTTCTTATTAGAGTACAATAGGGGTTGTTGTCATTACTAGAGAGCTTAAGTACAAGATGTTTTTTAGCCATGGACAGAAACAGAAAAGAAACATTTCACACACCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q498R1	Methionine synthase reductase OS=Rattus norvegicus OX=10116 GN=Mtrr PE=2 SV=2
Q8C1A3	Methionine synthase reductase OS=Mus musculus OX=10090 GN=Mtrr PE=1 SV=2
Q9UBK8	Methionine synthase reductase OS=Homo sapiens OX=9606 GN=MTRR PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00258 all species →	Flavodoxin_1	Flavodoxin	Domain	Interproscan
PF00667 all species →	FAD_binding_1	FAD binding domain	Domain	Interproscan
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008254 all species →	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR029039 all species →	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR003097 all species →	Domain	Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding	Interproscan
IPR001094 all species →	Domain	Flavodoxin-like	Interproscan
IPR001709 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan
IPR023173 all species →	Homologous_superfamily	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19384 all species →	NITRIC OXIDE SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0030586 all species →	Molecular Function	[methionine synthase] reductase (NADPH) activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050667 all species →	Biological Process	homocysteine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00597	MTRR; methionine synthase reductase	EC:1.16.1.8	Cobalamin transport and metabolism	ko04980	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.