Gene detail

Detailed information of g306.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_004207258.1, uncharacterized protein LOC101241007 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
D3YUG0	Sterile alpha motif domain-containing protein 13 OS=Mus musculus OX=10090 GN=Samd13 PE=4 SV=1
Q5VXD3	Sterile alpha motif domain-containing protein 13 OS=Homo sapiens OX=9606 GN=SAMD13 PE=1 SV=1
D3YXK1	Sterile alpha motif domain-containing protein 1 OS=Mus musculus OX=10090 GN=Samd1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|ZnF_UBP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02460	Patched	Patched family	Family	Interproscan
PF01066	CDP-OH_P_transf	CDP-alcohol phosphatidyltransferase	Family	Interproscan
PF03669	ASTER	PAT complex subunit Asterix	Family	Interproscan
PF04084	ORC2	Origin recognition complex subunit 2	Family	Interproscan
PF02121	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02148	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF19745	FUT8_N_cat	Alpha-(1,6)-fucosyltransferase N- and catalytic domains	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731	Domain	Sterol-sensing domain	Interproscan
IPR003392	Family	Protein patched/dispatched	Interproscan
IPR051697	Family	Patched domain-containing protein	Interproscan
IPR014472	Family	Choline/ethanolamine phosphotransferase	Interproscan
IPR043130	Homologous_superfamily	CDP-alcohol phosphatidyltransferase, transmembrane domain	Interproscan
IPR000462	Family	CDP-alcohol phosphatidyltransferase	Interproscan
IPR048254	Conserved_site	CDP-alcohol phosphatidyltransferase, conserved site	Interproscan
IPR005351	Family	PAT complex subunit Asterix	Interproscan
IPR007220	Family	Origin recognition complex, subunit 2	Interproscan
IPR023393	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR001666	Family	Phosphatidylinositol transfer protein	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001607	Domain	Zinc finger, UBP-type	Interproscan
IPR045573	Domain	Alpha-(1,6)-fucosyltransferase, N- and catalytic domain	Interproscan
IPR027350	Domain	Glycosyltransferase family 23 (GT23) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10796	PATCHED-RELATED	Interproscan
PTHR10414	ETHANOLAMINEPHOSPHOTRANSFERASE	Interproscan
PTHR13193	CGI-140	Interproscan
PTHR14052	ORIGIN RECOGNITION COMPLEX SUBUNIT 2	Interproscan
PTHR10658	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47665	HISTONE DEACETYLASE-LIKE PROTEIN	Interproscan
PTHR13132	ALPHA- 1,6 -FUCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004142	Molecular Function	diacylglycerol cholinephosphotransferase activity	Interproscan
GO:0004307	Molecular Function	ethanolaminephosphotransferase activity	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0006646	Biological Process	phosphatidylethanolamine biosynthetic process	Interproscan
GO:0008654	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0016780	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0030176	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0044183	Molecular Function	protein folding chaperone	Interproscan
GO:0045048	Biological Process	protein insertion into ER membrane	Interproscan
GO:0000808	Cellular Component	origin recognition complex	Interproscan
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005664	Cellular Component	nuclear origin of replication recognition complex	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0005548	Molecular Function	phospholipid transporter activity	Interproscan
GO:0015914	Biological Process	phospholipid transport	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008525	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0031210	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0006487	Biological Process	protein N-linked glycosylation	Interproscan
GO:0036071	Biological Process	N-glycan fucosylation	Interproscan
GO:0046921	Molecular Function	alpha-(1->6)-fucosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24682	PTCHD; patched domain-containing protein	-	Membrane trafficking	ko04131	deepkoala
K24682	PTCHD; patched domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala