Detailed information of g308.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002169901.1, ELAV-like protein 2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q60899ELAV-like protein 2 OS=Mus musculus OX=10090 GN=Elavl2 PE=1 SV=1
Q28GD4ELAV-like protein 2 OS=Xenopus tropicalis OX=8364 GN=elavl2 PE=2 SV=2
Q91584ELAV-like protein 3 OS=Xenopus laevis OX=8355 GN=elavl3 PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01522Polysacc_deac_1Polysaccharide deacetylaseFamilyInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF01390SEASEA domainFamilyInterproscan
PF02460PatchedPatched familyFamilyInterproscan
PF03159XRN_NXRN 5'-3' exonuclease N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR052740FamilyCarbohydrate Esterase 4Interproscan
IPR011330Homologous_superfamilyGlycoside hydrolase/deacetylase, beta/alpha-barrelInterproscan
IPR002509DomainNodB homology domainInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR002343FamilyParaneoplastic encephalomyelitis antigenInterproscan
IPR000082DomainSEA domainInterproscan
IPR036723Homologous_superfamilyAlpha-catenin/vinculin-like superfamilyInterproscan
IPR000731DomainSterol-sensing domainInterproscan
IPR003392FamilyProtein patched/dispatchedInterproscan
IPR051697FamilyPatched domain-containing proteinInterproscan
IPR004859DomainXrn1, N-terminalInterproscan
IPR027073Family5'-3' exoribonucleaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR001357DomainBRCT domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45985-Interproscan
PTHR24012RNA BINDING PROTEINInterproscan
PTHR10796PATCHED-RELATEDInterproscan
PTHR123415'->3' EXORIBONUCLEASEInterproscan
PTHR48312-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bondsInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004527Molecular Functionexonuclease activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24682PTCHD; patched domain-containing protein-Spliceosomeko03041deepkoala
Domain-containing proteins not elsewhere classifiedko04990deepkoala

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