Gene detail

Detailed information of g30904.t1 in Acropora digitifera

Genomic Location: chr14Alt:24772947...24773859
NR annotation: XP_015758869.1, PREDICTED: NF-kappa-B-repressing factor-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BY02	NF-kappa-B-repressing factor OS=Mus musculus OX=10090 GN=Nkrf PE=2 SV=3
O15226	NF-kappa-B-repressing factor OS=Homo sapiens OX=9606 GN=NKRF PE=1 SV=2
F4JCU0	SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana OX=3702 GN=SUA PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11952 all species →	XTBD	XRN-Two Binding Domain, XTBD	Family	Interproscan
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF01424 all species →	R3H	R3H domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021859 all species →	Domain	XRN2-binding (XTBD) domain	Interproscan
IPR036867 all species →	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR051189 all species →	Family	Splicing-associated domain-containing protein	Interproscan
IPR001374 all species →	Domain	R3H domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14195 all species →	G PATCH DOMAIN CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26458	NKRF; NF-kappa-B-repressing factor	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.