Detailed information of g30919.t1 in Montipora capitata

Genomic Location: xfSc0001948:1108...3622
NR annotation: XP_044184513.1, DNA ligase 1-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P51892DNA ligase 1 OS=Xenopus laevis OX=8355 GN=lig1 PE=2 SV=1
Q9W1H4DNA ligase 1 OS=Drosophila melanogaster OX=7227 GN=DNAlig1 PE=1 SV=2
P37913DNA ligase 1 OS=Mus musculus OX=10090 GN=Lig1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003742 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01068
all species →		DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050191
all species →		FamilyATP-dependent DNA ligaseInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR016059
all species →		Conserved_siteDNA ligase, ATP-dependent, conserved siteInterproscan
IPR012310
all species →		DomainDNA ligase, ATP-dependent, centralInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45674
all species →		DNA LIGASE 1/3 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003910
all species →		Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006266
all species →		Biological ProcessDNA ligationInterproscan
GO:0006273
all species →		Biological Processlagging strand elongationInterproscan
GO:0003909
all species →		Molecular FunctionDNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006310
all species →		Biological ProcessDNA recombinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g30919.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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