Gene detail

Detailed information of g3093.t1 in Tripedalia maipoensis

Genomic Location: scaffold_13:5841316...5883453
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3093.t1

ATGAGCGAACCGGAGTTAGCACCTGGGAAATTAGACGTGGTTGTTCACGATAACAAATGCAGTGAGAATATTATTAAGGATCGTTTAGTTCCAGAGGAGAAGCCAGAAGGGGAGTCGTTGACTCGAAGTTGTGAAGAGGAGGATGACAAGACAGACAGTGAAGCAGGAAGAAAGGAGACATGTAAGAAAGTTGAACCAGCACCACCACCGGCCAAGAATCCATGGAACAAAGGAAAAGGTGAGGAATGTGCTGCTCCTGTGCAACCACCACCTGCTTCTCGGAAGAAACCTGGAAGGGGTTCAGAACTGCTGGTTGACATTTCAAATTGGCCTAGTTTAGGTGAAGCGTCTAATAAAGGCCAGGTTGAAAAGCCTCCAACACCTGGAGCAAAGAAAGAAAACACCAAACCAGAGACTTTGGAACAACCAGTGTTAGAGGTTGAACCAGTGTCCTCACCCAGGGGCACACCCAAGAAGAAAGGTGCCAAACACAAGTGGGTGCCCATGTCCATCGAACCACCAACGTATGCCAACAATACGACATCGACGACGTCAGGCCCTAACCCGGCCGGCAGAGGTGAGAGGTCGCCAGAGGACAAGTATGGGCGCGGAGGTGGCCATCGCAATGGGACTAACGGTGTACCCACACGTGGAAGGGGTAGAGGACGAGGTGGTCGGGGAGGCAGAGGAAGAGGGAGGGGAAGAGGCGGTATGGATGGTGGGTTCTACCCCCAAGGCAACAGTAACTATCACCCCCTGGCGGCTTATACCCCCGACGGGCTTTATATTCCGCAGCCCTACGCATCTTTCTACCTTCAAGGAATGTATACCAATCCCGTAGCAGTAGAAGGAGATTCTTTGAAGGAAGCTATCAAAAATCAAGTAGAATATTATTTCAGTGAAGAAAATTTGGTGGGAGACTTCTTCCTCCGTCAACAGATGGACGAAGGAGGATGGCTCCCTCTTTCCATGATCGCCAGCTTCAATCGCGTCCACTCCTTGACGCAAGATTCCAATGTGATCTTAGAGGCTATTAAAGACAGTGAAATAGTCGAGGCAGATAGCTTTCGATTGCGGCCAAAGGTCAACCCCGAAAGTTGGCCAGTTGGCCTAAACAAAGGGATGACAGTTGAAAACTCAAATTTCCAAGTTGACGGCACAAAACTAGGAGGACTGACCAATGGAGAGCACCAGGACCTTGATTATGAACCAGTCAACATAATGTATGATTCTCCACCGGCGCCAAAGACTTTGTCCCAGCTCATTAAGGAAAATGAAAAGAGGTCTGAACTGGAAGTCAAGGAACCGAAAGAAGAAAAAGAGGCGTCAATGAAAGTTAAAGATCAGCAAGAAGAAAAACCCGAAAGAGTTCCCAAGTTGACAGTGGAAGAAGAGGAATGGCAAGAGGTTGTGAACAGGAGGCGATCTGGATCTGTTAACAGAGAGAAAAAGGGAAGAGATATGGTGGATACCAGAGAGGAGCTCGACTTCAAGTTTGATGAAGAGCTAAACGACGAAGGGACAGGCGAACGCAAAAGGACGCCATCCACATCGGATTGGACTGACGAATCCGATGATGAAATTGACGATTACGCCATCAGTAAAATCGTCATTGTTACCCAGACTCCTCCCCCGCCAAAGAAGCACGATAGAACTGGGCACTACACAACAAGAGCGAAGATGACGTCAGAGCTAGCTCAAGCTATTAACGATGGGTTGTACTATTATGAACAAGATTTGCAAGAGGAGAACGACCAGGACAGTTACAGAAATAGAAAGCTGGAACTGTGTTCATCATGGAAAACACTCGATATTATAAATCCGGACGAATTCGAACGGCAAAAGGCCGAACTAGACCAGTTGTCCAGGGCGAGATCACTGACATTTGAGCCTTCCGATATGACATCCAGCCATAAAATACCACCCCCTCGCCCCTCGGCCGAAGTTTCTCTCGATGTGCTTGCGTCATCCACTCTTTCTGTAGCTGCGGCTGAATTCAGACCAAGGTCTAAGAGCGCACAACTCTCTTCCTCGCTGCCAACGGCCATTCCTGCTGGACCACTTAAGAGAGGCTCGGACAAGAGTGAACTTCGACCGCGCAAAGCCTCTGGTAGAGGGCGTAAGGATCCCAAAGCCATCACCCGATTCTACCCAGCCATTTCTAAGGAGCATGCGGACGACAAGGTACCTAGAGTGCACAAGACAAAATACGGAGATAATCCTCCTATAGAAAGTCACGTGGGATGGGTATTTAGCCCCAAAGCACCCCGACTGAGAGGGAGACGACGTAATGATTCTAGGTCCGAAGACATGTATGGGACATCGCCTGCAGAGAGCATGGGCAGCAGTTTTGGTAGCCATGGCAGCCATGGTTCTACACCAAGCCTGCCGTTACACTTTCAACACCCCTCGCACACTTTGTTAAAAGATAATGGATTTGTGCAACAGGTGTACTCTAAGTACCACGAAAAATGTCTCAAAGAGAGAGAAAAAGTGGGCATCGGACAGTCGCAGGAGATGAATACTCTATTTCGCTTTTGGTCCTTCTTCCTGCGGTCTCATTTTCACAAGGGCATGTATCAGGAATTCAGGAAACTGGCAGTAGAAGATGCCCGAGCTGGATATCGGTACGGCCTTGAATGCCTCTTTAGATTTTACAGTTATGGACTGGAGAAAAAGTTCAAGCCAGAATTGTTCAATGACTTTCAGACAGAAACATTAAAAGATCACGTTGCGGGTCACCTTTATGGATTGGAAAAATTCTGGGCTTTTCTTAAATATTACAAGGGTAAATCCAAATTCTCCGTGAAACCGGAAGTAAAAGATCTGTTAGACAAGTTTAAAACCATTGACGATTTCCGGAAAGAGGCTTCCAGACTGGAGCAGGTACGACGCAGTGAGCAGAGCACCAGCGGCAGTCATCGTTCTCGAAATGCCTCTGAAAGTTCAAATTTGGAATCGAGTGGCACTATAAGTGGTGTTATCAAGAAGTGCGAGACGGACAGTAAAGAAACTGGTACGATAGCCAAGTCCACCCATTCTGGTGGGCTGGTTGAGGACGAGAGCAGCGCTAGGGTGCCTCCTGCCAATAACAATAACACAGCGCCGTTGGAAGAAGCCCCTAAATCGAGCGCGTCGGTTTGGTGA

Transcript

g3093.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21071 all species →	LARP1_HEAT	LARP1 HEAT repeat region	Repeat	Interproscan
PF05383 all species →	La	La domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006607 all species →	Repeat	LARP1-like, DM15 repeat	Interproscan
IPR045180 all species →	Family	La domain containing protein	Interproscan
IPR006630 all species →	Domain	La-type HTH domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792 all species →	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0048255 all species →	Biological Process	mRNA stabilization	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18757	LARP1; la-related protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.