Gene detail

Detailed information of g30970.t1 in Acropora digitifera

Genomic Location: chr14Alt:25343331...25353267
NR annotation: XP_029197432.2, RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr14Alt.g30970.t1

TGTGTGCGCACGCACACTTTTGATTATTTTGCAGCAACATTAGTTTAATTTGCAGCAACTCGTTTTGAAAATTTGCAGCAACTATTTTAAATTCGCAGCAACTTTATTTAATTTGCAGCAACTTAATTATATTTGCAGCAACTTTTTAAGTTGTGGGCCAGCGTACTTTTGCAAACAAAATCCGGTGAAAAAAAGATAGGGCATGGAACTAACTTCTACACCAGTCCTACTCGTTCTTTACTGCAGCGTGACCGCCATCTTTGTATCATTGGCTGTTTGTGGGAGCTATCATGACGTTCTTGCCCTGTTTGGAGTTCGTACCTGAAGATGCAATGTAAAATTCGAGAACTGTGAAAGGTTTGGTTATTTCTTCTGGAAAATTTTGGGCTAGAAATGGCACCAACCATTCAAGATGGGCAAAAGAATAGGGATCAGGATAGAAGGCAGAGTTCACATCGTTCAACTGTTAGCAAGGCTGATTTTGTATCAAGAGTCAAATACAACAACAACCTTCCCGACATTCCTTTTGACGCCAAGTTCATCACTTATCCATTTGAATCAAACAGATTTGTGGATTACAAGCCAACTTCGCTCGAGAAAAACTACAAGCATGAAATGCTAACAGAGGTGGATTTGGGAGTCAATATTGATCTTATTGACCCAGATACTTATGCTGTTGATCAAAACGTTTCTCTTGATCCTGATGATGAAAAACTTTTGGAAGAAGAACCTACAAATTTACCTGACAAAAAAAGAACAGCCCATCACAACAAGAATGTGTCATGGCTCAGACGAACAGAGTACATTTCAACTGAGTATAACAGAAGTCGTACAAGTAATGAAATGGTGGAGACCAAAGTTGGCTTCAATGTCAGAAAGAAATTTCAAGGGACAGACATCTACAAGGATCGTGAAAGTCAGATTTCAGCTATTGAGAGCACATTTGACTCAGCCCAGAGACCAATTCTCCGTCATCCAACAAAGGCCAATGTCACACCGGTGGAAATTTTACCTGTCTTCCCAGACTTTCAGATGTGGTCGCACCCTTGTGCACACGTTATATTTGACACTGACCCCACACCACGAGGAAGGAGTGGTCCGGCAGAAGAGGCAGAAATGTCACAAGCAATGATCAGAGGTATGGTGGATGCTAGTGGAGACCAGTTTGTAGCTTATTTTCTTCCAACATCAGACACTATGAGGAAGAGAAAAAGAGATCACAACAGTACAATGGACTATACAGAAGAAGAAGAGTATGAATACAAAATGGCACGGGAATACAACTGGAATGTTAAGAACAAAGCAAGTAAAGGCTATGAGGAAAATTTCTTTTTTGTTTTTCGTGAAGGAGAAGGAGTATTCTATAATGAATTGGTTACAAGGGTTCATTTGAGCAAGAGGCGAGTCCGTGGGGGTGCTGGTGGAGTACAGTCTGCTGTCTCACAGTTGGTCGTTAAACACAGGGAGTTGAATGACAATGAAAGGAAAGCGCAGCGAATGCGTATGGTTCAATTGGACACAGCCCCACCTGAGGAAGAAGAAGAAGAATTTGAAGATGAAGAGGGTGAGGAGGAAGATGCTGGCGGAGAAGGAGGTAATGAAGATGCAGACAATGGAGATGAGATTGACAAAGAGGAAGAAGAAGAAGAAGAGGAAGGAGAAAACCAAGAAAATGATGATGATGAGGATGATGATGATAATGAAGAGAAAGATGAAGAACAAGAAAGTAATGATGAAAAAGATGAAAAGGAAAGCAGTGCCGAAGAAGAATCAAGTGCAGAGGAGTCAGCCAGTGATGATGATGATGACGATGACGATGATGATGAGGAAGAAGACGGAGATTAAAGTGGCATGATGTGTGTACAAACTCTGGGCTCAAAAATATGTCGTCTTCCATGAGGAAAAATGTTCGGTATCTGGTTCACTTCGCCCTGTATGCCATCAAACATTCGAAGGACTTTGTACATATGTAAAACAACACTTTATAGAGGAATTGGATTTGTAAGACACTCTTATTTGAAGAAAACTTTCCATTTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2Y1	RNA polymerase II-associated factor 1 homolog OS=Xenopus tropicalis OX=8364 GN=paf1 PE=2 SV=1
Q4U0S5	RNA polymerase II-associated factor 1 homolog OS=Danio rerio OX=7955 GN=paf1 PE=1 SV=1
A2BD83	RNA polymerase II-associated factor 1 homolog OS=Xenopus laevis OX=8355 GN=paf1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03985 all species →	Paf1	Paf1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007133 all species →	Family	RNA polymerase II associated factor Paf1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23188 all species →	RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15174	PAF1; RNA polymerase II-associated factor 1	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.