Gene detail

Detailed information of g30988.t1 in Acropora digitifera

Genomic Location: chr14Alt:25531998...25543160
NR annotation: XP_029197469.2, S1 RNA-binding domain-containing protein 1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g30988.t1

ATGGCAAGCACTAGTTCGTTAAAGTTCTCGAGGATTGTAATGGTGCTGGCTGAGAGTCTGAATTTAGATCCTAGTGTTGTTCAAACAGTTATAATATTGCTGGACAACGATAACACGGTGCCATTTATCGCACGTTATCGCAAAGAACAAACTGGAGGATTAGACCCAACAGTTTTACGACAGATACAGGCTCAATACCAGCAACTAAAAGCCATTCAAGAACGTGCTGAGTCTGTTATTAAAAAGATTGGAGACAAGTTGACTCCTGAAATTTGCCGTTATCTTAGAAATGCAGTGACATTGGAGGAAATTGAAGAAGTGTATGCACCATTTAAAAAGGGCGGCAAAGGATCACATGCTGAGAGAGCAAGACAGCTTGGGCTTAATGAACCAGCTGAACGTTTGATAAATGATCCACATAGTGTTCAGCTTGAAAGATTGATTGACCCAAATACAGAAGGCTTGAAGAATATGAAACAAGTTTTACTCGGACTTCAGCATATTATTGCTGATATAATTGCAAAGGATCGTGAAACGTTAACTTCAATGAGGAAAATGTTAGAGAGACGCCCTATTCGCTTGGAATCGCATTTGTCCCGCGCAGCATCAAAAGAAAAAGAAAAGGGTTCAGGAGATAAGAAATATGAGCAATATCATGGATTCGACTTTCCCATCACAGCGCTCAAGGCGCATCAGGTGCTGGCTTTGAATAGAGGAGAACAAAATAAGATTCTTACCATTAAGTTAACCGTCCCTGAGCAAGTAGAGAAACAATTCCTGGCTCATCTGCGACAAGTATGGATACCCTGTGACGCACCAGGAAATATTAAAAAGTTATTCAACTCAGCAGTGGGCGATGCTTACAGCAGACTCATCAAACCAAAGGTCACGAGACTAAGCAGGAGTTTATTAACCAAGCAGGCTGAAAAGGAAAGCACTGATTTGTTTGTGACGAATTTGTACCGTCTACTACTCACCCCTCCCGTCAGGGGAAAGAATGTTCTTGGTCTAGACCCAGGCTTCTCTCACGGATGCAAATTGGCAGTTATTGGTTCGACAGGAGAGGTCCTGGACACAGCAGTTATCTTCCCGTTTGGTAAAAATGCAAATTCAATTCAAGCGAAAAACATGCTTGTTGAACTTGCGTTAAAGCACAGCTGTGACTATGTCGCTGTTGGAAACGGTGTTGGTTGTCGCGAAGCGGAGACCTTGATGAGTCAGCTCATCAAACAGCAAGCATTTGCTCCACTGGACATTGCTTACTGTATTGTCAGTGAAGATGGGGCTTCGATTTATAGCGTATCGTCAGAAGCAGATGCTGAGTTGCCGAGGCTGGACAGCAGTCTCAGGGGGGCTGTGTCAATAGCTCGGAGATTGCAGAATCCTCTGGTAGAGTTGGTCAAAATTGAACCCAAACATCTTGGAATTGGAATGTATCAGCACGATATTCCCGAGTGTTTACTCCGCGGAGCCTTGGACGGTGTTGTGGAGGATTGCGTCAGTTTCGTCGGCGTGGACTTAAATATGGCGGGCGTCAGTATGTTAAGGCGCATAGCTGGTTTGAACGACAAGAAAGCTAAATCTATATTGGCGTGGAGAGAGGAAAATGGCTCCTTCATAAACCGTGAGCAGCTAAAGCTAGTCAAGGGGATTGGGCTCAAATCTTACGAACAGTGTGTTGGATTCGTTAGAATCGTAAACGCGGGTGATCTCCATAGCAGCGCTTCAAATTCGTTGAGTAGCGGGCTCCGTTATGTGGATTTTGAAGAAGAAAAGAATATAACAGGGCGTGGGAAAAAACGTAAGGGTGAGAACAGCGAAGAAAGAGTGAAGAAGAAAAAGAAAAAGAAAACGAAACATGAGACGCAGGAATTCAGCCACAATCCTTTGGACATGACCTGGATTCACCCTGAATCGTATCCTGTCGCGGAAAGTGTAATGGCCTTGTTAAATATATCACCTGAACAGATTGGGCAGCCTGTGGTTAAAACTGCTATCAGCAACCTTCTTCAGTCTCATATGATTGATCACTTGGCCGCTCAATTGAAGGTTGGAACGCCTACCTTGCAGCATATTATTGACGGTCTGAGACAACCAAGTGACCAAGACATACGAAACAATTTCCAAAAGCCCTTATTCAAACGCAATGTTACGTCAATGGGTGATCTTCATCCGGGAACTCAACTTAGCGGCCGCGTCACAAACATGACGTCATTTGGAGCGTTCGTAGACTGTGGTGTTGGCCGTGACGGACTAGTGCATAAAAGTAACATGGGGCGATTTAATGGCGCTATCGGTCTGGGAGATCATGTGGATGTGATGGTACATCGCGTGGATTTAGAAAAGCAACATATTCAGCTGAGTCTTACGGGAATTTCTTCAAGATTTGACCCTCAGTTACTTGTTAAAATAGAGGAATTTTCGAACAACACGAACCTCTGA

Transcript

chr14Alt.g30988.t1

CGACAGTCTGCGTGACCTACATAACGTAACTGAGCCTGCGGGAAAGCCGCTGAAAATGGAGGGTGATTTGAACATTTCAGAGAAACAGTGACAAATTCTTCCTCAAGTGTTTTGATACATGCACTAAAATGGCAAGCACTAGTTCGTTAAAGTTCTCGAGGATTGTAATGGTGCTGGCTGAGAGTCTGAATTTAGATCCTAGTGTTGTTCAAACAGTTATAATATTGCTGGACAACGATAACACGGTGCCATTTATCGCACGTTATCGCAAAGAACAAACTGGAGGATTAGACCCAACAGTTTTACGACAGATACAGGCTCAATACCAGCAACTAAAAGCCATTCAAGAACGTGCTGAGTCTGTTATTAAAAAGATTGGAGACAAGTTGACTCCTGAAATTTGCCGTTATCTTAGAAATGCAGTGACATTGGAGGAAATTGAAGAAGTGTATGCACCATTTAAAAAGGGCGGCAAAGGATCACATGCTGAGAGAGCAAGACAGCTTGGGCTTAATGAACCAGCTGAACGTTTGATAAATGATCCACATAGTGTTCAGCTTGAAAGATTGATTGACCCAAATACAGAAGGCTTGAAGAATATGAAACAAGTTTTACTCGGACTTCAGCATATTATTGCTGATATAATTGCAAAGGATCGTGAAACGTTAACTTCAATGAGGAAAATGTTAGAGAGACGCCCTATTCGCTTGGAATCGCATTTGTCCCGCGCAGCATCAAAAGAAAAAGAAAAGGGTTCAGGAGATAAGAAATATGAGCAATATCATGGATTCGACTTTCCCATCACAGCGCTCAAGGCGCATCAGGTGCTGGCTTTGAATAGAGGAGAACAAAATAAGATTCTTACCATTAAGTTAACCGTCCCTGAGCAAGTAGAGAAACAATTCCTGGCTCATCTGCGACAAGTATGGATACCCTGTGACGCACCAGGAAATATTAAAAAGTTATTCAACTCAGCAGTGGGCGATGCTTACAGCAGACTCATCAAACCAAAGGTCACGAGACTAAGCAGGAGTTTATTAACCAAGCAGGCTGAAAAGGAAAGCACTGATTTGTTTGTGACGAATTTGTACCGTCTACTACTCACCCCTCCCGTCAGGGGAAAGAATGTTCTTGGTCTAGACCCAGGCTTCTCTCACGGATGCAAATTGGCAGTTATTGGTTCGACAGGAGAGGTCCTGGACACAGCAGTTATCTTCCCGTTTGGTAAAAATGCAAATTCAATTCAAGCGAAAAACATGCTTGTTGAACTTGCGTTAAAGCACAGCTGTGACTATGTCGCTGTTGGAAACGGTGTTGGTTGTCGCGAAGCGGAGACCTTGATGAGTCAGCTCATCAAACAGCAAGCATTTGCTCCACTGGACATTGCTTACTGTATTGTCAGTGAAGATGGGGCTTCGATTTATAGCGTATCGTCAGAAGCAGATGCTGAGTTGCCGAGGCTGGACAGCAGTCTCAGGGGGGCTGTGTCAATAGCTCGGAGATTGCAGAATCCTCTGGTAGAGTTGGTCAAAATTGAACCCAAACATCTTGGAATTGGAATGTATCAGCACGATATTCCCGAGTGTTTACTCCGCGGAGCCTTGGACGGTGTTGTGGAGGATTGCGTCAGTTTCGTCGGCGTGGACTTAAATATGGCGGGCGTCAGTATGTTAAGGCGCATAGCTGGTTTGAACGACAAGAAAGCTAAATCTATATTGGCGTGGAGAGAGGAAAATGGCTCCTTCATAAACCGTGAGCAGCTAAAGCTAGTCAAGGGGATTGGGCTCAAATCTTACGAACAGTGTGTTGGATTCGTTAGAATCGTAAACGCGGGTGATCTCCATAGCAGCGCTTCAAATTCGTTGAGTAGCGGGCTCCGTTATGTGGATTTTGAAGAAGAAAAGAATATAACAGGGCGTGGGAAAAAACGTAAGGGTGAGAACAGCGAAGAAAGAGTGAAGAAGAAAAAGAAAAAGAAAACGAAACATGAGACGCAGGAATTCAGCCACAATCCTTTGGACATGACCTGGATTCACCCTGAATCGTATCCTGTCGCGGAAAGTGTAATGGCCTTGTTAAATATATCACCTGAACAGATTGGGCAGCCTGTGGTTAAAACTGCTATCAGCAACCTTCTTCAGTCTCATATGATTGATCACTTGGCCGCTCAATTGAAGGTTGGAACGCCTACCTTGCAGCATATTATTGACGGTCTGAGACAACCAAGTGACCAAGACATACGAAACAATTTCCAAAAGCCCTTATTCAAACGCAATGTTACGTCAATGGGTGATCTTCATCCGGGAACTCAACTTAGCGGCCGCGTCACAAACATGACGTCATTTGGAGCGTTCGTAGACTGTGGTGTTGGCCGTGACGGACTAGTGCATAAAAGTAACATGGGGCGATTTAATGGCGCTATCGGTCTGGGAGATCATGTGGATGTGATGGTACATCGCGTGGATTTAGAAAAGCAACATATTCAGCTGAGTCTTACGGGAATTTCTTCAAGATTTGACCCTCAGTTACTTGTTAAAATAGAGGAATTTTCGAACAACACGAACCTCTGATATTTTTTGTGAGTCAACTCGGTGAGAACTGTTACGTTTTTTGGTGCTTTTGTCGATGGTGTTTGTGTTAAAGAGGAACAATAAAAAGACCTCGTTTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N5C6	S1 RNA-binding domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SRBD1 PE=1 SV=2
Q5RDI0	S1 RNA-binding domain-containing protein 1 OS=Pongo abelii OX=9601 GN=SRBD1 PE=2 SV=1
Q497V5	S1 RNA-binding domain-containing protein 1 OS=Mus musculus OX=10090 GN=Srbd1 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09371 all species →	Tex_N	Tex-like protein N-terminal domain	Domain	Interproscan
PF12836 all species →	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan
PF16921 all species →	Tex_YqgF	Tex protein YqgF-like domain	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF17674 all species →	HHH_9	HHH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018974 all species →	Domain	Tex-like protein, N-terminal	Interproscan
IPR023323 all species →	Homologous_superfamily	Tex-like domain superfamily	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR032639 all species →	Domain	Tex protein, YqgF-like domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR023319 all species →	Homologous_superfamily	Tex-like protein, HTH domain superfamily	Interproscan
IPR006641 all species →	Domain	YqgF/RNase H-like domain	Interproscan
IPR037027 all species →	Homologous_superfamily	YqgF/RNase H-like domain superfamily	Interproscan
IPR050437 all species →	Family	Bacterial ribosomal protein bS1	Interproscan
IPR041692 all species →	Domain	HHH domain 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10724 all species →	30S RIBOSOMAL PROTEIN S1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g30988.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.