Gene detail

Detailed information of g31059.t1 in Acropora digitifera

Genomic Location: chr14Alt:26441142...26469357
NR annotation: XP_029189553.2, rab3 GTPase-activating protein non-catalytic subunit-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g31059.t1

ATGTCCTGTTCATTGCCAGTGTTTGCATCTGTTCAGGATGTAAACAGAGTAATTTCTATACTTAGTAACATGTCTGGCGAAGAAGAAAACTCAGAGGGATGGAAAGTTGAGAATGACAATTGGGACTGGAATGAAACTGAAAGTGAGCAGTTGGAAATTTCACATTCATGGCTACAAGAGTGCTGCATTTCATTGTCTCCATCCAACGATACCTTGGCAGTTGCAAAAGATGACAAAGCAGTATTCCTTGCCAGCAAATGGAATAAGCCATCCGGAAAAGAACCCAACATCAAATATGAAATTTCTTGGAGCGGATGCCTTGCATTAGAAGAAGGGGAATGTATTGCCGATGTCATGTGCATACCACTGGCATCTCAACATAAAAGTTCTCAAGGATCACCAGACTGGACTTGTATTGTTGTTGGATTTACATCTGGATACATAAGGATTTACTTGCAAAATGGATCAATGCTACTTTCTCAGTTTCTACATGATGACCCTGTTCTAAAACTGAAATGTAGAACTTGGCAACCACATAAAAACTATGGAAGTGCTGAGCAGGTTGAAGAACTGGCCATCTTGTATCCAAGAGCCATGGTGATCATTGATGGTTTTAGTTTGTATCAGTCATTGAGAGCATGCAGAAACCAGTTGGCGAGGGCAAAAGCAAGTGGATCATCAGAGCTCATTGGCCCTCCACCCTTAGCTTACAAGAAATGGCGATTTGATGGTCAAAAGTACATCACAGATATTACAAGCTGTGGTGTTGTTCCTCCCAATATGTTTGATCGGCTGCAGAGGGCATCATTTCTTGGTGGTTTCAATGCATCTGTCAGTGGTAATATGCCTGCCATGTCTCATTATGTTGCCACAGGAATGGAGCCCTTTGTTGCAGTCTACATGGCAGTTGAGGGAAGTTCACCTGCCTTGATTTCAGACGTGGCATTAGCTGTAGCAAGTAAACTAACATCTGCAGTTTTGTCAAGGATCACAGCAGCGAGTGTACGTTTTCCCGTGGAAGGTCACATTTGTTTCCGTAACTTCAATCCAATTTGTCGCTTTGGCTGGCTTGGCTGGGGAACAAGTTCAGAGACCCAAGCAAAAGAACCAGGAAAAGCACTAAAACCCAAAGTGGAAAAAGGGACAACCCTTCCTGCAAGATTTGGCTTACCTGATACTCGTCGCCATGGCAACAGCATTACCCTAGCACCAAATGGCCGTCTAGCAGTGACCACTGATGATTTTGGACGTGTTATGCTATTAGATGCAAAGCAGGCAGTTGTTGTCAGAATATGGAAAGGCTACCGTGATGCCGAGTGTGGTTGGGTTATGGTGACAGAGGAAAATCATCAAGAGACAGATAATCCCAAGTCTTCACTTAGAACTGCTCTGTTTCTCGTTATTTATGCTACGAGGAGAGGAATTTTAGAGATCTGGAGAACAGAACAAGGACCTCGTGTAGCCGCCTTTAATGTTGGAAAGGACTGCAGGCTTCTCTACGCTGGCCATGGAATTATGGGACTAGGTCATGTGATCAAACAGGGGCAGGCCCCCCCACAGCACACTCTGAATTGCACTTTGATCCAAGGTGATGGAACCCTCAAGACATTCTCGGTACCATTCCACTGTGCCCTTAGTGACAAACATAGTAAAAGGGTCAGAGATTTGCACCTTCTGAAAAACCTTACATCCATTTTGGACGAAACAAAGCTGACTCCAGAGAATGGAAAAGGTGACACCGAAAGAGTAGAGATGGAAAAGGCTTTGTTAAATATTCTTAGCGACATACAAACTCCTCAGCTTCATCACCAGGGTTTGCAATGTGTTCTTTCAACTGTTGGAATTCCTTCGTCTGTTCTGCTCGAAGCGGTAACCACAGTCACTGAAGCAACAAAGAAAAAAAATCACCCACCTGATGACCTAGACGAAGAAAGTGATGATACTAAACTTCTCTTGGATTTCTGCAAAATGCACAAACAATTGATACAGACTCACGAATCCATAAAGAAACTTTACAAAGCTGAATCTGAATCGTTGGATGAAGCGCGGGACAGAAGGAATGAGAAACAGTCAGTGGCAAGTCTTCTTGGAATGACCAAATCTGAGGTTTGTGACCTTCTCACAACACTTGAACAAGATCAGTCCTTTCAACACACTCCACCTGCAAACAAACCTTTCCAATCAACCGTATCGCTGAGCATCACTTCCTTTCTCGGCTGCTTCGAGTTTGCTTCGGTTAAAAGCCGAAGCAACGATGAGGAAGCGAGGGCCGATGATAGAGACGGTCCGTCAGGGTCAGGAATCACTGTTGCAGTTCGAAGAGGCTTGTCGAGTGATATGACCCTCCAGCTTGACGCAGTGACACCCCCCCCCCCCCCCCCGCCCCCTCCCCACTCCTCGAGCTTTCTTTTCAAGATGTGCTTGATGGGGCATTGTCCGGCAGGAAAACTGGCAATTCCATTTGATTCATCAGGAATCAATCCTCAACAGTTGATGAATCTGTTGTTGTCTGAGTGGCTTTTGGACCCGGAGCCGTGCTATGACGCTGTAACAACCTTGTTTCACCTTCACTCTCTCATATCTACAATAAGTTCATTTACAGGAGCTCTACTAAGCGACAGTTCTTCGTCATCGGCATGTGACGATGCTGTGTCTCCATGGTGGGAAAATATTCGTCACAGTCTTGCTCAGTCCACTGCCACGAGACGCGCGTTGTCTTTGGCTGTCGCGTGCCGAGCTGTTGCTATGGAAATCAGCACTGCTTCCAGGAAAGTAGAGGATGAAGATGAAGAAGCTGAAAGGGAGGAGCTTGCTTCGGGAGACTGGGTATCAGTGTCTGTGGACGTTGAGCGTTGGAATCTGCTAGTGTGTCAGCTGACTGACTTGCAGGCTCTGGCAAGGTTTATTGCAAATCTGACGATCCGGACTGGTAACGAGAAAAACGCTCTTGACAGAAGTGGCTCCATTGGAATCTCTGTTGTTGATTTCTTGAGCTTCGGCCAGGGCGCAGCCTCCAAAGTGTTATCACAATTCATCACCCAATTTAACATACCAGCAAGCCACTTGGGGACACCACGCACATGCGCACTAAAGAAGGTGGATAGTCAAATGATGAGTGAGACCGGGAATGAAGATCAACCGGAAGTCGAACCTGAACCGGAAGTACAGACTGAACTAGAAGGGCTTGGTGAATTGAGACTAAGGTTCCCTCACAGTTTGAATCAAGACGTGCTTTGGTGTCACTGTGTAATGGCATTAGTTTCCTGTTGGAACAATAACAAGGAAGAAACTAATAACTTTTTTCTTGCATTGGAGCATTTACGATGCATCCACTCTCCTGTTCTTCAAAACGGGCTGGCTGTTATAATATGGAAAAGATATTTAAAAGATAAGATATCCGCGACAGTTATGCTTATGGAGAAGGTTGGAAAGGCCCCTAAAGATCGGCTATGTAGAAAGACAGTGGATTTAAGCTATGTTGCATTGGAACAGCTCATCAAGGCTACTCTCCACCTGCTAGAGCTAATTGTTGAGATCGAATGGGCTGATTCCGAAGCCATCACCTTGGAAACTGAGGATTTTTGGCATGTTGGAGAAACTAATTCAAAGTCCCTTGTGGATGAAGCGCAGGAACAACCGCCCAGTAATGCATCGCTCGTAGAGCTCCATGCGAAGCTTGTCACCGTTTTGTGGATAATCATTGGCCTTGAAATGAAGAGCGTCAAACCACTTTCTCTCTTCGATACAACGAGCAAGGAATCGTTTATGAGAGATTTTAGCTGCTCTAGCCCTGTGTCGGCATCTGAAGAGATTGATAAAGCGATCATAGACTCGAGAGAAAAGTTTCTTACTCGAGCCTTGTCTGTCACGGTCAGTTCCATGACGACCCACACTGATAACAATGTTTCAGAGGCAGAAATGGACGCCCCAATGAAAGACTGGTCGGCGGCTATTTACAAGCTCGCAGAGCAGTTTGGGATGGATGCTGATTCCTTCAAGCGTCATTTTGTTCGTGAACTCTACTCCGTCGGTTTTGATGAGCTTGCAAAAGAAAGCATGTTGTGTGTGCGAGATCAGCGCTTGTTGGCTTCTCAGCTCCTGAGAATTGTGGGACAGCGTCTTGCTCACGTGATTTTGGATGCATCGGAGTCCAATGAGCGTGCGATTCGTTTGTCGCGGCTTCCAACACAGATCAGCAGCTGGATCAAAACTCAAGACCCCAGCAAGCTTGCTTGTCGTACGGTGGCTCTCTCACACACAGTGGATCTCCTGCGTGTTGTGATGAGTCTCACACCTGAAGACTCTCCAGATTATCCTCTCACATCCGAGCTAGCTGATTCAATGAAGTTCTTGCTCTAA

Transcript

chr14Alt.g31059.t1

TGGACACATAAAAAATAGAGACTTGCACTAAAGAAAGTTGAATTGAAAATGTCCTGTTCATTGCCAGTGTTTGCATCTGTTCAGGATGTAAACAGAGTAATTTCTATACTTAGTAACATGTCTGGCGAAGAAGAAAACTCAGAGGGATGGAAAGTTGAGAATGACAATTGGGACTGGAATGAAACTGAAAGTGAGCAGTTGGAAATTTCACATTCATGGCTACAAGAGTGCTGCATTTCATTGTCTCCATCCAACGATACCTTGGCAGTTGCAAAAGATGACAAAGCAGTATTCCTTGCCAGCAAATGGAATAAGCCATCCGGAAAAGAACCCAACATCAAATATGAAATTTCTTGGAGCGGATGCCTTGCATTAGAAGAAGGGGAATGTATTGCCGATGTCATGTGCATACCACTGGCATCTCAACATAAAAGTTCTCAAGGATCACCAGACTGGACTTGTATTGTTGTTGGATTTACATCTGGATACATAAGGATTTACTTGCAAAATGGATCAATGCTACTTTCTCAGTTTCTACATGATGACCCTGTTCTAAAACTGAAATGTAGAACTTGGCAACCACATAAAAACTATGGAAGTGCTGAGCAGGTTGAAGAACTGGCCATCTTGTATCCAAGAGCCATGGTGATCATTGATGGTTTTAGTTTGTATCAGTCATTGAGAGCATGCAGAAACCAGTTGGCGAGGGCAAAAGCAAGTGGATCATCAGAGCTCATTGGCCCTCCACCCTTAGCTTACAAGAAATGGCGATTTGATGGTCAAAAGTACATCACAGATATTACAAGCTGTGGTGTTGTTCCTCCCAATATGTTTGATCGGCTGCAGAGGGCATCATTTCTTGGTGGTTTCAATGCATCTGTCAGTGGTAATATGCCTGCCATGTCTCATTATGTTGCCACAGGAATGGAGCCCTTTGTTGCAGTCTACATGGCAGTTGAGGGAAGTTCACCTGCCTTGATTTCAGACGTGGCATTAGCTGTAGCAAGTAAACTAACATCTGCAGTTTTGTCAAGGATCACAGCAGCGAGTGTACGTTTTCCCGTGGAAGGTCACATTTGTTTCCGTAACTTCAATCCAATTTGTCGCTTTGGCTGGCTTGGCTGGGGAACAAGTTCAGAGACCCAAGCAAAAGAACCAGGAAAAGCACTAAAACCCAAAGTGGAAAAAGGGACAACCCTTCCTGCAAGATTTGGCTTACCTGATACTCGTCGCCATGGCAACAGCATTACCCTAGCACCAAATGGCCGTCTAGCAGTGACCACTGATGATTTTGGACGTGTTATGCTATTAGATGCAAAGCAGGCAGTTGTTGTCAGAATATGGAAAGGCTACCGTGATGCCGAGTGTGGTTGGGTTATGGTGACAGAGGAAAATCATCAAGAGACAGATAATCCCAAGTCTTCACTTAGAACTGCTCTGTTTCTCGTTATTTATGCTACGAGGAGAGGAATTTTAGAGATCTGGAGAACAGAACAAGGACCTCGTGTAGCCGCCTTTAATGTTGGAAAGGACTGCAGGCTTCTCTACGCTGGCCATGGAATTATGGGACTAGGTCATGTGATCAAACAGGGGCAGGCCCCCCCACAGCACACTCTGAATTGCACTTTGATCCAAGGTGATGGAACCCTCAAGACATTCTCGGTACCATTCCACTGTGCCCTTAGTGACAAACATAGTAAAAGGGTCAGAGATTTGCACCTTCTGAAAAACCTTACATCCATTTTGGACGAAACAAAGCTGACTCCAGAGAATGGAAAAGGTGACACCGAAAGAGTAGAGATGGAAAAGGCTTTGTTAAATATTCTTAGCGACATACAAACTCCTCAGCTTCATCACCAGGGTTTGCAATGTGTTCTTTCAACTGTTGGAATTCCTTCGTCTGTTCTGCTCGAAGCGGTAACCACAGTCACTGAAGCAACAAAGAAAAAAAATCACCCACCTGATGACCTAGACGAAGAAAGTGATGATACTAAACTTCTCTTGGATTTCTGCAAAATGCACAAACAATTGATACAGACTCACGAATCCATAAAGAAACTTTACAAAGCTGAATCTGAATCGTTGGATGAAGCGCGGGACAGAAGGAATGAGAAACAGTCAGTGGCAAGTCTTCTTGGAATGACCAAATCTGAGGTTTGTGACCTTCTCACAACACTTGAACAAGATCAGTCCTTTCAACACACTCCACCTGCAAACAAACCTTTCCAATCAACCGTATCGCTGAGCATCACTTCCTTTCTCGGCTGCTTCGAGTTTGCTTCGGTTAAAAGCCGAAGCAACGATGAGGAAGCGAGGGCCGATGATAGAGACGGTCCGTCAGGGTCAGGAATCACTGTTGCAGTTCGAAGAGGCTTGTCGAGTGATATGACCCTCCAGCTTGACGCAGTGACACCCCCCCCCCCCCCCCCGCCCCCTCCCCACTCCTCGAGCTTTCTTTTCAAGATGTGCTTGATGGGGCATTGTCCGGCAGGAAAACTGGCAATTCCATTTGATTCATCAGGAATCAATCCTCAACAGTTGATGAATCTGTTGTTGTCTGAGTGGCTTTTGGACCCGGAGCCGTGCTATGACGCTGTAACAACCTTGTTTCACCTTCACTCTCTCATATCTACAATAAGTTCATTTACAGGAGCTCTACTAAGCGACAGTTCTTCGTCATCGGCATGTGACGATGCTGTGTCTCCATGGTGGGAAAATATTCGTCACAGTCTTGCTCAGTCCACTGCCACGAGACGCGCGTTGTCTTTGGCTGTCGCGTGCCGAGCTGTTGCTATGGAAATCAGCACTGCTTCCAGGAAAGTAGAGGATGAAGATGAAGAAGCTGAAAGGGAGGAGCTTGCTTCGGGAGACTGGGTATCAGTGTCTGTGGACGTTGAGCGTTGGAATCTGCTAGTGTGTCAGCTGACTGACTTGCAGGCTCTGGCAAGGTTTATTGCAAATCTGACGATCCGGACTGGTAACGAGAAAAACGCTCTTGACAGAAGTGGCTCCATTGGAATCTCTGTTGTTGATTTCTTGAGCTTCGGCCAGGGCGCAGCCTCCAAAGTGTTATCACAATTCATCACCCAATTTAACATACCAGCAAGCCACTTGGGGACACCACGCACATGCGCACTAAAGAAGGTGGATAGTCAAATGATGAGTGAGACCGGGAATGAAGATCAACCGGAAGTCGAACCTGAACCGGAAGTACAGACTGAACTAGAAGGGCTTGGTGAATTGAGACTAAGGTTCCCTCACAGTTTGAATCAAGACGTGCTTTGGTGTCACTGTGTAATGGCATTAGTTTCCTGTTGGAACAATAACAAGGAAGAAACTAATAACTTTTTTCTTGCATTGGAGCATTTACGATGCATCCACTCTCCTGTTCTTCAAAACGGGCTGGCTGTTATAATATGGAAAAGATATTTAAAAGATAAGATATCCGCGACAGTTATGCTTATGGAGAAGGTTGGAAAGGCCCCTAAAGATCGGCTATGTAGAAAGACAGTGGATTTAAGCTATGTTGCATTGGAACAGCTCATCAAGGCTACTCTCCACCTGCTAGAGCTAATTGTTGAGATCGAATGGGCTGATTCCGAAGCCATCACCTTGGAAACTGAGGATTTTTGGCATGTTGGAGAAACTAATTCAAAGTCCCTTGTGGATGAAGCGCAGGAACAACCGCCCAGTAATGCATCGCTCGTAGAGCTCCATGCGAAGCTTGTCACCGTTTTGTGGATAATCATTGGCCTTGAAATGAAGAGCGTCAAACCACTTTCTCTCTTCGATACAACGAGCAAGGAATCGTTTATGAGAGATTTTAGCTGCTCTAGCCCTGTGTCGGCATCTGAAGAGATTGATAAAGCGATCATAGACTCGAGAGAAAAGTTTCTTACTCGAGCCTTGTCTGTCACGGTCAGTTCCATGACGACCCACACTGATAACAATGTTTCAGAGGCAGAAATGGACGCCCCAATGAAAGACTGGTCGGCGGCTATTTACAAGCTCGCAGAGCAGTTTGGGATGGATGCTGATTCCTTCAAGCGTCATTTTGTTCGTGAACTCTACTCCGTCGGTTTTGATGAGCTTGCAAAAGAAAGCATGTTGTGTGTGCGAGATCAGCGCTTGTTGGCTTCTCAGCTCCTGAGAATTGTGGGACAGCGTCTTGCTCACGTGATTTTGGATGCATCGGAGTCCAATGAGCGTGCGATTCGTTTGTCGCGGCTTCCAACACAGATCAGCAGCTGGATCAAAACTCAAGACCCCAGCAAGCTTGCTTGTCGTACGGTGGCTCTCTCACACACAGTGGATCTCCTGCGTGTTGTGATGAGTCTCACACCTGAAGACTCTCCAGATTATCCTCTCACATCCGAGCTAGCTGATTCAATGAAGTTCTTGCTCTAAACACGGGAAGATGCGTAGCGGTCGTGCATCGCGGAGTCAATTCGACGGTCAAGAGCCTTAATTGCGTTACGTGATTATGTAGGTGCGTGCACATTCATCACGATGAAAATCTTAAAGACGCCAAAGTGGGTCTAAAGAATGAACCGATCGTAAAAAAAAAATAAAACAAACAACGGAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H2M9	Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens OX=9606 GN=RAB3GAP2 PE=1 SV=1
Q5U1Z0	Rab3 GTPase-activating protein non-catalytic subunit OS=Rattus norvegicus OX=10116 GN=Rab3gap2 PE=1 SV=2
Q8BMG7	Rab3 GTPase-activating protein non-catalytic subunit OS=Mus musculus OX=10090 GN=Rab3gap2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14656 all species →	RAB3GAP2_C	Rab3 GTPase-activating protein regulatory subunit C-terminus	Family	Interproscan
PF14655 all species →	RAB3GAP2_N	Rab3 GTPase-activating protein regulatory subunit N-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026059 all species →	Family	Rab3GAP regulatory subunit	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR029257 all species →	Domain	Rab3GAP regulatory subunit, C-terminal	Interproscan
IPR032839 all species →	Domain	Rab3-GAP regulatory subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12472 all species →	RAB3-GAP REGULATORY DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19937	RAB3GAP2; Rab3 GTPase-activating protein non-catalytic subunit	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.