Detailed information of g311.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: TNE32017.1, rhodanese-related sulfurtransferase [Alphaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q1GYV1tRNA uridine(34) hydroxylase OS=Methylobacillus flagellatus (strain ATCC 51484 / DSM 6875 / VKM B-1610 / KT) OX=265072 GN=trhO PE=3 SV=1
Q3IGA3tRNA uridine(34) hydroxylase OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=trhO PE=3 SV=1
C3K059tRNA uridine(34) hydroxylase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=trhO PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00650CRAL_TRIOCRAL/TRIO domainDomainInterproscan
PF03765CRAL_TRIO_NCRAL/TRIO, N-terminal domainDomainInterproscan
PF13513HEAT_EZHEAT-like repeatRepeatInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF00241Cofilin_ADFCofilin/tropomyosin-type actin-binding proteinDomainInterproscan
PF01835MG2MG2 domainDomainInterproscan
PF17789MG4Macroglobulin domain MG4DomainInterproscan
PF17791MG3Macroglobulin domain MG3DomainInterproscan
PF00581RhodaneseRhodanese-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR026126FamilyBRISC and BRCA1-A complex member 1Interproscan
IPR001251DomainCRAL-TRIO lipid binding domainInterproscan
IPR036865Homologous_superfamilyCRAL-TRIO lipid binding domain superfamilyInterproscan
IPR011074DomainCRAL/TRIO, N-terminal domainInterproscan
IPR036273Homologous_superfamilyCRAL/TRIO, N-terminal domain superfamilyInterproscan
IPR000225RepeatArmadilloInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR029006Homologous_superfamilyADF-H/Gelsolin-like domain superfamilyInterproscan
IPR002108DomainActin-depolymerising factor homology domainInterproscan
IPR028458FamilyTwinfilinInterproscan
IPR002890DomainMacroglobulin domainInterproscan
IPR050473FamilyAlpha-2-macroglobulin/Complement systemInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR040839DomainMacroglobulin domain MG4Interproscan
IPR041555DomainMacroglobulin domain MG3Interproscan
IPR001763DomainRhodanese-like domainInterproscan
IPR020936FamilytRNA uridine(34) hydroxylaseInterproscan
IPR036873Homologous_superfamilyRhodanese-like domain superfamilyInterproscan
IPR010281FamilyProtein of unknown function DUF885Interproscan
IPR006916FamilyPopeye proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR34072ENZYMATIC POLYPROTEIN-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR15660UNCHARACTERIZEDInterproscan
PTHR10174ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATEDInterproscan
PTHR16356TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6Interproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR13759TWINFILINInterproscan
PTHR11412MACROGLOBULIN / COMPLEMENTInterproscan
PTHR43268THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2Interproscan
PTHR33361GLR0591 PROTEINInterproscan
PTHR12101POPEYE DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0007095Biological Processmitotic G2 DNA damage checkpoint signalingInterproscan
GO:0016604Cellular Componentnuclear bodyInterproscan
GO:0045739Biological Processpositive regulation of DNA repairInterproscan
GO:0070531Cellular ComponentBRCA1-A complexInterproscan
GO:0070552Cellular ComponentBRISC complexInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:1902936Molecular Functionphosphatidylinositol bisphosphate bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0003785Molecular Functionactin monomer bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005884Cellular Componentactin filamentInterproscan
GO:0010591Biological Processregulation of lamellipodium assemblyInterproscan
GO:0010976Biological Processpositive regulation of neuron projection developmentInterproscan
GO:0030016Cellular ComponentmyofibrilInterproscan
GO:0030042Biological Processactin filament depolymerizationInterproscan
GO:0030837Biological Processnegative regulation of actin filament polymerizationInterproscan
GO:0042989Biological Processsequestering of actin monomersInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0051016Biological Processbarbed-end actin filament cappingInterproscan
GO:0004866Molecular Functionendopeptidase inhibitor activityInterproscan
GO:0030552Molecular FunctioncAMP bindingInterproscan
GO:0042383Cellular ComponentsarcolemmaInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08870TWF; twinfilin-General function prediction only-deepkoala
Toll and Imd signaling pathwayko04624deepkoala
Chromosome and associated proteinsko03036deepkoala
Cilium and associated proteinsko03037deepkoala

TOP