Gene detail

Detailed information of g31150.t1 in Montipora capitata

Genomic Location: xfSc0002304:1146...9719
NR annotation: XP_029205925.2, NPC intracellular cholesterol transporter 1-like isoform X2 [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g31150.t1

atgttgtggcaatttcgcgacgaaaatgggcgcatcattgttgtttcttcgtttgatcatgctgttattcgtcgtgtcctcgttattcgtagcccagttaataataatgatgatgatgatggtggtgatgatgatgatgatgatgatgatgacgacgacaacgacgacgacaacgatgatgacgatgatgatgatgtcaaaagtgaagagtatgcaaaatatcataaaaagggatattgtgtctggtatggccaatgcacaaatgaaactaaagccaaaaactgcttttacaatggaccagcaaaggagcttaaggatccggaaggtgtaaaattattgaacagcatttgccctgaactacgtggtcaacatacttgctgtgacactaaacagctaaaaagtctggtctcaagcttacaaacaatgagacaactatcatctcgttgcccagcttgctggaacaacatgaggaggctttattgtgagtcaacgtgtgacagggatcagtctttatttttggacccaactttccttatgaacaataaaacaatttttcaaattagttactttgtatcggagaaattcaagcaaggattgtacgactcctgcaaagaagtcaccttccctgggaacaatgaaaaggtgatgaatctgctttgtggaccatcagcaggaacatgttctccgcaaaagctgcttgattacatgggaaataccttaaatgggtatgctccattcactattaattttccacgaaaacttacacctaaccttcactggatgaacaagaaaatccttaaatgcaatgaatcattttttgatcttcaaaataacaggacagccaacccatgcagttgtcaagattgcacaccttcatgccctgtacaccctccacccccatccaaaccaaagcctctaaaaattatgggacttgatcttctctcatttggtcttctcttggcatatttattatttttaatgatattcatacctagcagtatcatttactcgtttgggaagaataaaaaatgtcactcagttgtggagaatacccagtcaattgaatcgtctcatcatgctccataccctacccctgtccaagtagactcgcgccctggagtgtgtgcacgtttaggaagcaagatggagtccgccttgtgttactggtttacacgttggggaatttggtgtagcagtcatccgtttgtagtgatggttacctgtttagtcatggttggtgctcttgcgtgcggtgttaagttctttactgtgactacagacccagtggacttatggtcatcgcctaacagtgaggcacgtgacgagaaagacgtttatgattccaagttcaatccattctttcgcacggagcagcttatcattcgtccaaaacatccagttcccactggttaccaccattttggtgacggaaaatggattccatttggacctatctttcatttggatttattaaatcaggctcttgaccttcagaatgagatcacaaacatgagggtaccatttggttctggtaacatcacactggaggacatctgtttccaacctcttgcaccacaaaaacatgaatgtaccattcagagcatctttcagtattttcagaacaataacacaagactgaacaagtgtcttaccagcatgggatacatgtgcaacaataagacgttgcacatcgacttcaaggcttacgatttccatgatcatgttattttttgcacaagctcttccacatcatatgatggttacttgggcatgccttgccttggtgcatatggtggaccggtggcaccaaacattgctcttggaggattcgatggctctgcttacaagaatgcctcaactttaatcatcagctttatcgtcaacaaccacaaagacaagaacaaacttaaaaaagcattagcgtgggagaaggcctttgtaaatttcatgaaagactatgttgagaatcctaaaaatagtaatttgaccatcagctatcatgccgaacgctctatccaggatgaacttgaacgtgagagtaaaactgatgtgatcactattcttgtcagctatctgattatgtttctgtacatcacagtggcattgggacagtatacagattgcagcacaatcatggtgagcagcattgagagtttaacttga

Transcript

g31150.t1

ATGTTGTGGCAATTTCGCGACGAAAATGGGCGCATCATTGTTGTTTCTTCGTTTGATCATGCTGTTATTCGTCGTGTCCTCGTTATTCGTAGCCCAGttaataataatgatgatgatgatggtggtgatgatgatgatgatgatgatgatgacgacgacaacgacgacgacaacgatgatgacgatgatgatgatGTCAAAAGTGAAGAGTATGCAAAATATCATAAAAAGGGATATTGTGTCTGGTATGGCCAATGCACAAATGAAACTAAAGCCAAAAACTGCTTTTACAATGGACCAGCAAAGGAGCTTAAGGATCCGGAAGGTGTAAAATTATTGAACAGCATTTGCCCTGAACTACGTGGTCAACATACTTGCTGTGACACTAAACAGCTAAAAAGTCTGGTCTCAAGCTTACAAACAATGAGACAACTATCATCTCGTTGCCCAGCTTGCTGGAACAACATGAGGAGGCTTTATTGTGAGTCAACGTGTGACAGGGATCAGTCTTTATTTTTGGACCCAACTTTCCTTatgaacaataaaacaatttttcaaaTTAGTTACTTTGTATCGGAGAAATTCAAGCAAGGATTGTacgactcctgcaaagaagtCACCTTCCCTGGGAACAATGAAAAGGTGATGAATCTGCTTTGTGGACCATCAGCAGGAACATGTTCTCCGCAAAAGCTGCTTGATTACATGGGAAATACCTTAAATGGGTATGCTCCATTCACTATTAATTTTCCACGAAAACTTACACCTAACCTTCACTGGATGAACAAGAAAATCCTTAAATGCAATGAATCATTTTTTGATCTTCAAAATAACAGGACAGCCAACCCATGCAGTTGTCAAGATTGCACACCTTCATGCCCTGTACACCCTCCACCCCCATCCAAACCAAAGCCTCTAAAAATTATGGGACTTGATCTTCTCTCATTTGGTCTTCTCTTGgcatatttattatttttaatgatATTCATACCTAGCAGTATCATTTACTCGTTTGGGAAGAATAAAAAATGTCACTCAGTTGTGGAGAATACCCAGTCAATTGAATCGTCTCATCATGCTCCATACCCTACCCCTGTCCAAGTAGACTCGCGCCCTGGAGTGTGTGCACGTTTAGGAAGCAAGATGGAGTCCGCCTTGTGTTACTGGTTTACACGTTGGGGAATTTGGTGTAGCAGTCATCCGTTTGTAGTGATGGTTACCTGTTTAGTCATGGTTGGTGCTCTTGCGTGCGGTGTTAAGTTCTTTACTGTGACTACAGACCCAGTGGACTTATGGTCATCGCCTAACAGTGAGGCACGTGACGAGAAAGACGTTTATGATTCCAAGTTCAATCCATTCTTTCGCACGGAGCAGCTTATCATTCGTCCAAAACATCCAGTTCCCACTGGTTACCACCATTTTGGTGACGGAAAATGGATTCCATTTGGACCTATCTTTCATTTGGATTTATTAAATCAGgcTCTTGACCTTCAGAATGAGATCACAAACATGAGGGTACCATTTGGTTCTGGTAACATCACACTGGAGGACATCTGTTTCCAACCTCTTGCACCACAAAAACATGAATGTACCATTCAGAGCATCTTTCAGTATTTTCAGAACAATAACACAAGACTGAACAAGTGTCTTACCAGCATGGGATACATGTGCAACAATAAGACGTTGCACATCGACTTCAAGGCTTACGATTTCCATGATCATGTTATTTTTTGCACAAGcTCTTCCACATCATATGATGGTTACTTGGGCATGCCTTGCCTTGGTGCATATGGTGGACCGGTGGCACCAAACATTGCTCTTGGAGGATTCGATGGCTCTGCTTACAAGAATGCCTCAACTTTAATCATCAGCTTTATCGTCAACAACCACAAAGACAAGAACAAACTTAAAAAAGCATTAGCGTGGGAGAAGGCCTTTGTAAATTTCATGAAAGACTATGTTGAGAATCCTAAAAATAGTAATTTGACCATCAGCTATCATGCCGAACGCTCTATCCAGGATGAACTTGAACGTGAGAGTAAAACTGATGTGATCACTATTCTTGTCAGCTATCTGATTATGTTTCTGTACATCACAGTGGCATTGGGACAGTATACAGATTGCAGCACAATCATGGTGAGCAGCATTGAGAGTTTAACTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56941	NPC intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1 PE=2 SV=1
O35604	NPC intracellular cholesterol transporter 1 OS=Mus musculus OX=10090 GN=Npc1 PE=1 SV=2
O15118	NPC intracellular cholesterol transporter 1 OS=Homo sapiens OX=9606 GN=NPC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001652 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16414 all species →	NPC1_N	Niemann-Pick C1 N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032190 all species →	Domain	Niemann-Pick C1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45727 all species →	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015918 all species →	Biological Process	sterol transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05175	GABRA; gamma-aminobutyric acid receptor subunit alpha	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.