Gene detail

Detailed information of g31150.t1 in Montipora capitata

Genomic Location: xfSc0002304:1146...9719
NR annotation: XP_029205925.2, NPC intracellular cholesterol transporter 1-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

g31150.t1

atgttgtggcaatttcgcgacgaaaatgggcgcatcattgttgtttcttcgtttgatcatgctgttattcgtcgtgtcctcgttattcgtagcccagttaataataatgatgatgatgatggtggtgatgatgatgatgatgatgatgatgacgacgacaacgacgacgacaacgatgatgacgatgatgatgatgtcaaaagtgaagagtatgcaaaatatcataaaaagggatattgtgtctggtatggccaatgcacaaatgaaactaaagccaaaaactgcttttacaatggaccagcaaaggagcttaaggatccggaaggtgtaaaattattgaacagcatttgccctgaactacgtggtcaacatacttgctgtgacactaaacagctaaaaagtctggtctcaagcttacaaacaatgagacaactatcatctcgttgcccagcttgctggaacaacatgaggaggctttattgtgagtcaacgtgtgacagggatcagtctttatttttggacccaactttccttatgaacaataaaacaatttttcaaattagttactttgtatcggagaaattcaagcaaggattgtacgactcctgcaaagaagtcaccttccctgggaacaatgaaaaggtgatgaatctgctttgtggaccatcagcaggaacatgttctccgcaaaagctgcttgattacatgggaaataccttaaatgggtatgctccattcactattaattttccacgaaaacttacacctaaccttcactggatgaacaagaaaatccttaaatgcaatgaatcattttttgatcttcaaaataacaggacagccaacccatgcagttgtcaagattgcacaccttcatgccctgtacaccctccacccccatccaaaccaaagcctctaaaaattatgggacttgatcttctctcatttggtcttctcttggcatatttattatttttaatgatattcatacctagcagtatcatttactcgtttgggaagaataaaaaatgtcactcagttgtggagaatacccagtcaattgaatcgtctcatcatgctccataccctacccctgtccaagtagactcgcgccctggagtgtgtgcacgtttaggaagcaagatggagtccgccttgtgttactggtttacacgttggggaatttggtgtagcagtcatccgtttgtagtgatggttacctgtttagtcatggttggtgctcttgcgtgcggtgttaagttctttactgtgactacagacccagtggacttatggtcatcgcctaacagtgaggcacgtgacgagaaagacgtttatgattccaagttcaatccattctttcgcacggagcagcttatcattcgtccaaaacatccagttcccactggttaccaccattttggtgacggaaaatggattccatttggacctatctttcatttggatttattaaatcaggctcttgaccttcagaatgagatcacaaacatgagggtaccatttggttctggtaacatcacactggaggacatctgtttccaacctcttgcaccacaaaaacatgaatgtaccattcagagcatctttcagtattttcagaacaataacacaagactgaacaagtgtcttaccagcatgggatacatgtgcaacaataagacgttgcacatcgacttcaaggcttacgatttccatgatcatgttattttttgcacaagctcttccacatcatatgatggttacttgggcatgccttgccttggtgcatatggtggaccggtggcaccaaacattgctcttggaggattcgatggctctgcttacaagaatgcctcaactttaatcatcagctttatcgtcaacaaccacaaagacaagaacaaacttaaaaaagcattagcgtgggagaaggcctttgtaaatttcatgaaagactatgttgagaatcctaaaaatagtaatttgaccatcagctatcatgccgaacgctctatccaggatgaacttgaacgtgagagtaaaactgatgtgatcactattcttgtcagctatctgattatgtttctgtacatcacagtggcattgggacagtatacagattgcagcacaatcatggtgagcagcattgagagtttaacttga

Transcript

g31150.t1

ATGTTGTGGCAATTTCGCGACGAAAATGGGCGCATCATTGTTGTTTCTTCGTTTGATCATGCTGTTATTCGTCGTGTCCTCGTTATTCGTAGCCCAGttaataataatgatgatgatgatggtggtgatgatgatgatgatgatgatgatgacgacgacaacgacgacgacaacgatgatgacgatgatgatgatGTCAAAAGTGAAGAGTATGCAAAATATCATAAAAAGGGATATTGTGTCTGGTATGGCCAATGCACAAATGAAACTAAAGCCAAAAACTGCTTTTACAATGGACCAGCAAAGGAGCTTAAGGATCCGGAAGGTGTAAAATTATTGAACAGCATTTGCCCTGAACTACGTGGTCAACATACTTGCTGTGACACTAAACAGCTAAAAAGTCTGGTCTCAAGCTTACAAACAATGAGACAACTATCATCTCGTTGCCCAGCTTGCTGGAACAACATGAGGAGGCTTTATTGTGAGTCAACGTGTGACAGGGATCAGTCTTTATTTTTGGACCCAACTTTCCTTatgaacaataaaacaatttttcaaaTTAGTTACTTTGTATCGGAGAAATTCAAGCAAGGATTGTacgactcctgcaaagaagtCACCTTCCCTGGGAACAATGAAAAGGTGATGAATCTGCTTTGTGGACCATCAGCAGGAACATGTTCTCCGCAAAAGCTGCTTGATTACATGGGAAATACCTTAAATGGGTATGCTCCATTCACTATTAATTTTCCACGAAAACTTACACCTAACCTTCACTGGATGAACAAGAAAATCCTTAAATGCAATGAATCATTTTTTGATCTTCAAAATAACAGGACAGCCAACCCATGCAGTTGTCAAGATTGCACACCTTCATGCCCTGTACACCCTCCACCCCCATCCAAACCAAAGCCTCTAAAAATTATGGGACTTGATCTTCTCTCATTTGGTCTTCTCTTGgcatatttattatttttaatgatATTCATACCTAGCAGTATCATTTACTCGTTTGGGAAGAATAAAAAATGTCACTCAGTTGTGGAGAATACCCAGTCAATTGAATCGTCTCATCATGCTCCATACCCTACCCCTGTCCAAGTAGACTCGCGCCCTGGAGTGTGTGCACGTTTAGGAAGCAAGATGGAGTCCGCCTTGTGTTACTGGTTTACACGTTGGGGAATTTGGTGTAGCAGTCATCCGTTTGTAGTGATGGTTACCTGTTTAGTCATGGTTGGTGCTCTTGCGTGCGGTGTTAAGTTCTTTACTGTGACTACAGACCCAGTGGACTTATGGTCATCGCCTAACAGTGAGGCACGTGACGAGAAAGACGTTTATGATTCCAAGTTCAATCCATTCTTTCGCACGGAGCAGCTTATCATTCGTCCAAAACATCCAGTTCCCACTGGTTACCACCATTTTGGTGACGGAAAATGGATTCCATTTGGACCTATCTTTCATTTGGATTTATTAAATCAGgcTCTTGACCTTCAGAATGAGATCACAAACATGAGGGTACCATTTGGTTCTGGTAACATCACACTGGAGGACATCTGTTTCCAACCTCTTGCACCACAAAAACATGAATGTACCATTCAGAGCATCTTTCAGTATTTTCAGAACAATAACACAAGACTGAACAAGTGTCTTACCAGCATGGGATACATGTGCAACAATAAGACGTTGCACATCGACTTCAAGGCTTACGATTTCCATGATCATGTTATTTTTTGCACAAGcTCTTCCACATCATATGATGGTTACTTGGGCATGCCTTGCCTTGGTGCATATGGTGGACCGGTGGCACCAAACATTGCTCTTGGAGGATTCGATGGCTCTGCTTACAAGAATGCCTCAACTTTAATCATCAGCTTTATCGTCAACAACCACAAAGACAAGAACAAACTTAAAAAAGCATTAGCGTGGGAGAAGGCCTTTGTAAATTTCATGAAAGACTATGTTGAGAATCCTAAAAATAGTAATTTGACCATCAGCTATCATGCCGAACGCTCTATCCAGGATGAACTTGAACGTGAGAGTAAAACTGATGTGATCACTATTCTTGTCAGCTATCTGATTATGTTTCTGTACATCACAGTGGCATTGGGACAGTATACAGATTGCAGCACAATCATGGTGAGCAGCATTGAGAGTTTAACTTGA

Protein

Uniprot

Uniprot term	Description
P56941	NPC intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1 PE=2 SV=1
O35604	NPC intracellular cholesterol transporter 1 OS=Mus musculus OX=10090 GN=Npc1 PE=1 SV=2
O15118	NPC intracellular cholesterol transporter 1 OS=Homo sapiens OX=9606 GN=NPC1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16414	NPC1_N	Niemann-Pick C1 N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032190	Domain	Niemann-Pick C1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45727	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015918	Biological Process	sterol transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0032934	Molecular Function	sterol binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05175	GABRA; gamma-aminobutyric acid receptor subunit alpha	-	Ion channels	ko04040	deepkoala