Gene detail

Detailed information of g31268.t1 in Montipora capitata

Genomic Location: xfSc0002473:2976...5482
NR annotation: XP_028417863.1, uncharacterized protein LOC114542541 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

g31268.t1

atggcgagtggattgacttttttatgctgcagtctattactccaagttttcgcgatttctttgaattctaagtggctcttcatcagcaaccttgttcgtaataatgaatggcttcagcaagatttatttcctggtgacatttctcgaattgctctaaataattgccttgtaaatgcgagtaatcgtgtccgccatcttggatttgctgctactcatttggcgactcatcgttctggtggatcagagacgttgaacaaactatggaaagttgtttcacctcatgccccagctactatgttacttcggaagaagtttttaaagccaagaatattctattcgtcgaaccaaacagcttcgtttaatcctgctatattcgttctcagcatcagtggcgatgttgaggccaaccctggtccaagcaacaaccaaacgagatcttcggtaatcaaatgctttaattgctcgataactgtagagagtaaccacaagaggctgtggtgtgagaaatgtcttaccctgactcatgctcgctgtgttaatattttaccaatggagctaaaacatatacgtacttgcagtcctcttaaatggatatgtgataaatgtaccctgagcgaactcccgttcttcagtgtcaaggactttgactctttagatccactgaatgaacatgtttcgtctaacgaatataattctgatagtcatctggaggaattaaatgccaggatatcaaatttttctgttatgcacttgaacacccaatgtatgacttctacatttaatgagctgctgctgacagttcagacataccaacttgatgtagtgtccctaagtgaaacgtggctgaaggataatcacctattattgaatcatgtttcaattcctggctacattcaagaatttagaaacagagatggaattaaaggtggaggtgttggagcatatattaaagaaagcatcaaatataagaggctaaaagacattgaaaataagcaccccaatctggagcacctttggattgaggttggtgatatacgtgttacgcgctttgctccaagatttaaacacattcgtaatgagcgtcagttcaatgaggagtcttacgttgaagactgtgctaatcttccattgagtgttgtttatgctcttgaggatcccaatgatgcacacgcaactaaagcacaagacatctggcgaaagtttcgtgatgtgcgaaacctcctgaagaagaaaatacgtgaagctcgccaaaatttcatcaataaagctctctcatccaaaaagcctaaagaggtgtggcaggttatctaccgtattctgcacccaaatcctacacccttgaggtgcaatgtagatgctgtaaatgaacactttgcaagtacagccaagaggactacttgtgtccaaacatctgatactaaagaagacctgatagccttcttgaatgcactacaacccgaagagtctctgacaggaaatgacagctttaccttaaggcttgttacattccatgaggtcctacgtgagctaaagcacctacgatcagacacatccacaggtcctgacctaattccaacaaattttttaaagcctattgctgaatatattgcgagccctttaattcacataattaactcatttattacattttgtgactttccagataaatggaaacaagctcgtataacttcaatcccaaaagtggatagtcctcaagataacaatgattttcgaccaatctccatattgcccgttttgtctaaaatctacgagaggcttgttcacaaccaagttgttcagtttttggaaaatcaccatctccttgaggacaatatttctggatttaggaaaggccactctacaacatctgttttattaagcatgcgtgctgacatattgaaagcaatgaatcggagcgaatgcaccctgcttgttttagctgacttctcgaaggcttttgacactgtcaagtataagtctgtgcttgagaaaatgaagcacagcactccacgtgtcggccaaaacatcaaaaatatcttggacatccggcccagtgcaatccagaagaagagctcgcctctgcactgtattgttgtccttaccggggacaataatcaaaccttttccatccccatataa

Transcript

g31268.t1

ATGGCGAGTGGATTGACTTTTTTATGCTGCAGTCTATTACTCCAAGTTTTCGCGATTTCTTTGAATTCTAAGTGGCTCTTCATCAGCAACCTTGTTCGTAATAATGAATGGCTTCAGCAAGATTTATTTCCTGGTGACATTTCTCGAATTGCTCTAAATAATTGCCTTGTAAATGCGAGTAATcgtgtccgccatcttggatttgcTGCTACTCATTTGGCGACTCATCGTTCTGGTGGATCAGAGACGTTGAACAAACTATGGAAAGTTGTTTCACCTCATGCCCCAGCTACTATGTTACTTCGGAAGAAGTTTTTAAAGCCAAGAATATTCTATTCGTCGAACCAAACAGCTTCGTTTAATCCTGCTATATTCGTTCTCAGCATCAGTGGCGATGTTGAGGCCAACCCTGGTCCAAGCAACAACCAAACGAGATCTTCGGTAATCAAATGCTTTAATTGCTCGATAACTGTAGAGAGTAACCACAAGAGGCTGTGGTGTGAGAAATGTCTTACCCTGACTCATGCTCGCTGTGTTAATATTTTACCAATGGAGCTAAAACATATACGTACTTGCAGTCCTCTTAAATGGATATGTGATAAATGTACCCTGAGCGAACTCCCGTTCTTCAGTGTCAAGGACTTTGACTCTTTAGATCcactgaatgaacatgtttCGTCTAACGAATATAATTCTGATAGTCATCTGGAGGAATTAAATGCCAGGATATCAAATTTTTCTGTTATGCACTTGAACACCCAATGTATGACTTCTACATTTAATGAGCTGCTGCTGACAGTTCAGACATACCAACTTGATGTAGTGTCCCTAAGTGAAACGTGGCTGAAGGATAATCACCTATTATTGAATCATGTTTCAATTCCTGGCTACATTCAAGAATTTAGAAACAGAGATGGAATTAAAGGTGGAGGTGTTGGAGCATATATTAAAGAAAGCATCAAATATAAGAGGCTAAAAGACATTGAAAATAAGCACCCCAATCTGGAGCACCTTTGGATTGAGGTTGGTGATATACGTGTTACGCGCTTTGCTCCAAGATTTAAACACATTCGTAATGAGCGTCAGTTCAATGAGGAGTCTTACGTTGAAGACTGTGCTAATCTTCCATTGAGTGTTGTTTATGCTCTTGAGGATCCCAATGATGCACACGCAACTAAAGCACAAGACATCTGGCGAAAGTTTCGTGATGTGCGAAACCTCCTGAAGAAGAAAATACGTGAAGCTCGCCAAAATTTCATCAATAAAGCTCTCTCATCCAAAAAGCCTAAAGAGGTGTGGCAGGTTATCTACCGTATTCTGCACCCAAATCCTACACCCTTGAGGTGCAATGTAGATGCTGTAAATGAACACTTTGCAAGTACAGCCAAGAGGACTACTTGTGTCCAAACATCTGATACTAAAGAAGACCTGATAGCCTTCTTGAATGCACTACAACCCGAAGAGTCTCTGACAGGAAATGACAGCTTTACCTTAAGGCTTGTTACATTCCATGAGGTCCTACGTGAGCTAAAGCACCTACGATCAGACACATCCACAGGTCCTGACCTAATTCCAACAAATTTTTTAAAGCCTATTGCTGAATATATTGCGAGCCCTTTAATTCACATAATTAACTCATTTATTACATTTTGTGACTTTCCAGATAAATGGAAACAAGCTCGTATAACTTCAATCCCAAAAGTGGATAGTCCTCAAGATAACAATGATTTTCGACCAATCTCCATATTGCCCGTTTTGTCTAAAATCTACGAGAGGCTTGTTCACAACCAAGTTGTTCAGTTTTTGGAAAATCACCATCTCCTTGAGGACAATATTTCTGGATTTAGGAAAGGCCACTCTACAACATCTGTTTTATTAAGCATGCGTGCTGACATATTGAAAGCAATGAATCGGAGCGAATGCACCCTGCTTGTTTTAGCTGACTTCTCGAAGGCTTTTGACACTGTCAAGTATAAGTCTGTGCTTGAGAAAATGAAGCACAGCACTCCACGTGTCGGCCAAAACATCAAAAATATCTTGGACATCCGGCCCAGTGCAATCCAGAAGAAGAGCTCGCCTCTGCACTGTATTGTTGTCCTTACCGGGGACAATAATCAAACCTTTTCCATCCCCATATAA

Protein

Uniprot

Uniprot term	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan