Gene detail

Detailed information of g313.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_115937529.1, glycine cleavage system aminomethyltransferase GcvT [Aestuariispira insulae]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14110	Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gcv1 PE=3 SV=1
P54260	Aminomethyltransferase, mitochondrial OS=Solanum tuberosum OX=4113 GN=GDCST PE=2 SV=1
O49849	Aminomethyltransferase, mitochondrial OS=Flaveria anomala OX=35877 GN=GDCST PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000757 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000938 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001048 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003261 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003713 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004378 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004753 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004934 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005054 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005519 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015599 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0030299 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF01571 all species →	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF08669 all species →	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan
PF00568 all species →	WH1	WH1 domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02671 all species →	PAH	Paired amphipathic helix repeat	Repeat	Interproscan
PF13921 all species →	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan
PF01607 all species →	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00497 all species →	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045216 all species →	Family	Casein Kinase 2, subunit alpha	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR028896 all species →	Family	Aminomethyltransferase-like	Interproscan
IPR029043 all species →	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR006222 all species →	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR013977 all species →	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR006223 all species →	Family	Glycine cleavage system T protein	Interproscan
IPR027266 all species →	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR000697 all species →	Domain	WH1/EVH1 domain	Interproscan
IPR045027 all species →	Family	Homer family	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR052435 all species →	Family	YY1-Associated Transcriptional Regulator	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003822 all species →	Repeat	Paired amphipathic helix	Interproscan
IPR036600 all species →	Homologous_superfamily	Paired amphipathic helix superfamily	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan
IPR001223 all species →	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR050542 all species →	Family	Glycosyl Hydrolase 18 Family Chitinases	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR001638 all species →	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR050995 all species →	Family	WD repeat and F-box domain-containing protein	Interproscan
IPR000867 all species →	Domain	Insulin-like growth factor-binding protein, IGFBP	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011390 all species →	Family	Insulin-like growth factor binding protein-related protein (IGFBP-rP), MAC25	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR051367 all species →	Family	mRNA Translation Regulation/Replication-dependent Histone mRNA Translation	Interproscan
IPR052350 all species →	Family	Metallo-dependent Lactonases	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24054 all species →	CASEIN KINASE II SUBUNIT ALPHA	Interproscan
PTHR43757 all species →	AMINOMETHYLTRANSFERASE	Interproscan
PTHR10918 all species →	HOMER	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR16088 all species →	YY1 ASSOCIATED PROTEIN-RELATED	Interproscan
PTHR45708 all species →	ENDOCHITINASE	Interproscan
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan
PTHR14604 all species →	WD40 REPEAT PF20	Interproscan
PTHR14186 all species →	INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED	Interproscan
PTHR23254 all species →	EIF4G DOMAIN PROTEIN	Interproscan
PTHR43569 all species →	AMIDOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005956 all species →	Cellular Component	protein kinase CK2 complex	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0004047 all species →	Molecular Function	aminomethyltransferase activity	Interproscan
GO:0006546 all species →	Biological Process	glycine catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007216 all species →	Biological Process	G protein-coupled glutamate receptor signaling pathway	Interproscan
GO:0035256 all species →	Molecular Function	G protein-coupled glutamate receptor binding	Interproscan
GO:2001256 all species →	Biological Process	regulation of store-operated calcium entry	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004568 all species →	Molecular Function	chitinase activity	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0035082 all species →	Biological Process	axoneme assembly	Interproscan
GO:1990716 all species →	Cellular Component	axonemal central apparatus	Interproscan
GO:0001558 all species →	Biological Process	regulation of cell growth	Interproscan
GO:0005520 all species →	Molecular Function	insulin-like growth factor binding	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0006446 all species →	Biological Process	regulation of translational initiation	Interproscan
GO:0008494 all species →	Molecular Function	translation activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00605	gcvT, AMT; glycine cleavage system T protein (aminomethyltransferase)	EC:2.1.2.10	One carbon pool by folate	ko00670	deepkoala
K01558	WNT16; wingless-type MMTV integration site family, member 16	-	Glycosaminoglycan binding proteins	ko00536	deepkoala
K03097	CSNK2A; casein kinase II subunit alpha	EC:2.7.11.1	Ribosome biogenesis	ko03009	deepkoala
K14322	PAIP1; polyadenylate-binding protein-interacting protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala
K15010	HOMER; homer	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.