Detailed information of g31399.t1 in Montipora capitata

Genomic Location: xfSc0002717:105...9535
NR annotation: XP_044163789.1, uncharacterized protein LOC114976113 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007143 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00066
all species →
NotchLNR domainDomainInterproscan
PF00801
all species →
PKDPKD domainDomainInterproscan
PF07974
all species →
EGF_2EGF-like domainDomainInterproscan
PF12947
all species →
EGF_3EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR000800
all species →
DomainNotch domainInterproscan
IPR000601
all species →
DomainPKD domainInterproscan
IPR050969
all species →
FamilyDevelopmental Signaling ModulatorsInterproscan
IPR035986
all species →
Homologous_superfamilyPKD domain superfamilyInterproscan
IPR013111
all species →
DomainEGF-like domain, extracellularInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR016201
all species →
DomainPSI domainInterproscan
IPR022409
all species →
DomainPKD/Chitinase domainInterproscan
IPR024731
all species →
DomainEGF domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14949
all species →
EGF-LIKE-DOMAIN, MULTIPLE 7, 8Interproscan

 Gene Ontology
No Gene Ontology signature was detected for g31399.t1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g31399.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g31399.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
12TPM > 0
3Conditions
0.9Max TPM
0.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organisms · ambient pH treatment 21 5 0.10 0.87
whole organisms · low pH treatment 15 4 0.10 0.68
whole organisms · extra low pH treatment pH treatment 12 3 0.13 0.65

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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