Gene detail

Detailed information of g3148.t1.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3033438.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g3148.t1

ATGAAAGTCAAGGAAGTGAACAGAACAGCAAACATTGCATGGAGTCCTGCACCCCAGTACCCTATCTACCTTGCGGCAGGCACAGCTGCTCAACAGCTTGATGCTACCTTCAGCACCAATGCTGCCCTTGAGATTTTTGCTCTCAACCTGTCTGAAAGTGGTGATACAGAGATGCCGCTTAAAGGAACTGTGTCTTCAGAGCACAGGTTTCACAAACTAATATGGGGATCTCATGGAATGGAATCTTCCAGCGCATCATCTGGCCTTTTGATTGGTGGCAGTGACAATGGCATTATCAGCATCTATGATGCAAAGAAGATTATATCTGGAGATGTTGACGACTCCATTGTGTTTCAGTCTACTAAGCACACAGgGCCTGTCCAAGCACTGGATTTGAATCCTTTTAAAACAAGCTTGTTGGCATCAGGGGCTAGTGATTCTGAAATCTACATTTGGGATTTAACAAACCCCAACAAACCCCTCACACCAGGAAGTAAAACTTTGCCACCTGATAACATCAGTTGTGTGTCATGGAATAGACAAGTGCAGCACATATTGGCCTCCGCATCGCCTTGTGGTCGCTGTGTTGTGTGGGATTTGAGGAAGAATGAACCAATCATTAAAGTCAGTGATCAGAGTGCTATGATTCGAGCCAAAGCTGTTGAATGGCATCCTGATGTTGCAACACAAATGGTTTTAGCCTCTGAAGATGACAGATATCCAGTTATCCAGATGTGGGATCTTCGTTTTGCAACATCTCCTATGAAAGTTCTTGAAGGCCACCAGAGAGGAATCCTGTCAATAGCCTGGTGTCCGCAGGATCCTGACTTGCTCATGAGTTGTGCCAAGGACAATCGTATTCTCTGTTGGAATCCAAATACCCAAGAAGCAGGAGGAGAGATTGTTTATGAGCTGCCAACCACAGCTCAGTGGAGTTTTGATGTAGCTTGGTGTCCTAGAAACCCTGCCATGGTCTGCAGTTCTTCATTTGATGGCCATGTTAGTGTGTTTTCTCTCATGGGCGGAAGTGCTAAATCTAGCCAAGATTTTCATCAACAGAAAGTCATGAGTGCATTTGACGTAGATGACCCCTTTGCTGCACAGATTCATCAGgcccaacaacaacaacagcagcagaAGGCAGCATTAACTAGTGCCCCTCTGAAGAAGCCTCCAAAGTGGCTGCGCAGGCCATGTGGTGCCACATTTGCTtttggTGGAAAACTGATATCCTTTGGGCACACAAAGGATTCACCAGCTGCCCAGGTGAACATAAGCCAAGTGACCACAGAACAAGAGCTAGTGAACAGATCTTATGAGTTGGAGGGCGCTCTGGCTTCAGGAAGCTTTATCCAGTATTGTAATTCAAAAGTGGAGAGCAGTACACAAGAGTTGGAAAGAACACTGTGGAGCTTCTTGAAGATTAATTTTGAAAGAGAACCAAGGAGACATTTCTTAACCCTTCTTGGCTATGATCCAGTGGAACTATCAAAGAAGGTTGCATCTTCTCACACATCATCAGCTACAAGTAGTAATCAAGGAGGAGTTGACGCAGAAGAATTAGTTCAAAAGATGCAACTTATATCGTCTGGGGAAGCAAGTGGGAAGTCAGGACAGGGTGTGTTTTCTAGTGGTGCAAGTACACCATCTGTAGCTGAATCTAAGACTCCCTTATCAGAAGCTAGTAGCCTGAGTGAAGGAGCTGCAGCCTTTGATGTTATTGCATCTGGAGGGCCACTGACAGTTGACACAGGGAATTTAGGTGTTGGGGAACCTGCGAAGTCATCATCACCCTTTGAGATACCTACTGATGATGATACTGATGGTCTAATCTCTCAAGCCTTGCTTACTGGAAATTTTGAAGCAGCAGTAGATGTTTGTCTGCATGCTGATAGAATGGCTGATGCTTTTCTTCTTGCCATTGCTGGTGGCCCGGACCTGTTGGCCAGGATTCAAACAAGATACTTTGAGAAGAGCAAGAGTAATGTGGCAAGGCTCATGTCAGTAGTTGTGAATCGTGACTGGCGTGATATAGTTGAAAGCTGTGTTCTGGAGAACTGGAGAGAAGCGCTTGCAGCTCTTGTAAcatatgccaaggctgaagagtTCACTGCACTGTGTGACCTGTTGGGACAGAGGCTGGAACAGGAGGGTGATGAGCATTGTGCTAATGCCATGGTCTGCTACATTTGTGCTGGAAATGTGGAGAAGTTTGTGTCTTGTTGgtCTAGAAATATGCCCGCTGAGCCTTCTCCTTTAGCCCTTCAAGAATTGATTGAAAAAGTTATGATACTGAAGAAAGCTGTTGAGAGGGAACGGCGACTGTTGATTGACAGTGGTTCATCTGTTTTGGCTGAGAAACTGAGGTactcttttttctttaaatCTCTGATGGTTTGA

Transcript

g3148.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q7SYD5	Protein transport protein Sec31A OS=Danio rerio OX=7955 GN=sec31a PE=2 SV=1
Q5R4F4	Protein transport protein Sec31A OS=Pongo abelii OX=9601 GN=SEC31A PE=2 SV=1
O94979	Protein transport protein Sec31A OS=Homo sapiens OX=9606 GN=SEC31A PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12931	Sec16_C	Sec23-binding domain of Sec16	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR040251	Family	Protein transport protein SEC31-like	Interproscan
IPR024298	Domain	Ancestral coatomer element 1, Sec16/Sec31	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13923	SEC31-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007029	Biological Process	endoplasmic reticulum organization	Interproscan
GO:0030127	Cellular Component	COPII vesicle coat	Interproscan
GO:0070971	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110	Biological Process	COPII-coated vesicle cargo loading	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14005	SEC31; protein transport protein SEC31	-	Secretion system	ko02044	deepkoala