Detailed information of g315.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_068515050.1, MULTISPECIES: sirohydrochlorin chelatase [unclassified Oleiphilus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O87690Sirohydrochlorin cobaltochelatase OS=Priestia megaterium OX=1404 GN=cbiX PE=1 SV=1
Q55451Sirohydrochlorin cobaltochelatase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=cbiX PE=1 SV=1
P61817Sirohydrochlorin ferrochelatase OS=Priestia megaterium OX=1404 GN=sirB PE=3 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01903CbiXCbiXDomainInterproscan
PF00375SDFSodium:dicarboxylate symporter familyFamilyInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF05277DUF726Protein of unknown function (DUF726)FamilyInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF21549PRDM2_PRPR domain zinc finger protein 2, PR domainDomainInterproscan
PF00163Ribosomal_S4Ribosomal protein S4/S9 N-terminal domainFamilyInterproscan
PF01479S4S4 domainDomainInterproscan
PF00167FGFFibroblast growth factorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050963FamilySirohydrochlorin Cobaltochelatase/CbiXInterproscan
IPR002762FamilySirohydrochlorin cobaltochelatase CbiX-likeInterproscan
IPR036458Homologous_superfamilySodium:dicarboxylate symporter superfamilyInterproscan
IPR018107Conserved_siteSodium:dicarboxylate symporter, conserved siteInterproscan
IPR050746FamilyDicarboxylate/Amino Acid:Cation SymporterInterproscan
IPR001991FamilySodium:dicarboxylate symporterInterproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR050590FamilyExosome complex component Rrp42 subfamilyInterproscan
IPR007941FamilyProtein of unknown function DUF726Interproscan
IPR028747FamilyCation channel sperm-associated protein 2Interproscan
IPR005821DomainIon transport domainInterproscan
IPR027359Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR046341Homologous_superfamilySET domain superfamilyInterproscan
IPR001214DomainSET domainInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR050331FamilyZinc fingerInterproscan
IPR018079Conserved_siteSmall ribosomal subunit protein uS4, conserved siteInterproscan
IPR001912DomainSmall ribosomal subunit protein uS4, N-terminalInterproscan
IPR036986Homologous_superfamilyRNA-binding S4 domain superfamilyInterproscan
IPR022801FamilySmall ribosomal subunit protein uS4Interproscan
IPR002942DomainRNA-binding S4 domainInterproscan
IPR005710FamilySmall ribosomal subunit protein uS4, eukaryotic/archaealInterproscan
IPR002209FamilyFibroblast growth factor familyInterproscan
IPR008996Homologous_superfamilyCytokine IL1/FGFInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33542SIROHYDROCHLORIN FERROCHELATASE, CHLOROPLASTICInterproscan
PTHR11958SODIUM/DICARBOXYLATE SYMPORTER-RELATEDInterproscan
PTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINInterproscan
PTHR17920TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4Interproscan
PTHR46923CATION CHANNEL SPERM-ASSOCIATED PROTEIN 2Interproscan
PTHR16515PR DOMAIN ZINC FINGER PROTEINInterproscan
PTHR1183130S 40S RIBOSOMAL PROTEINInterproscan
PTHR11486FIBROBLAST GROWTH FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016829Molecular Functionlyase activityInterproscan
GO:0015293Molecular Functionsymporter activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005313Molecular FunctionL-glutamate transmembrane transporter activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0015175Molecular Functionneutral L-amino acid transmembrane transporter activityInterproscan
GO:0015501Molecular Functionglutamate:sodium symporter activityInterproscan
GO:0015813Biological ProcessL-glutamate transmembrane transportInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0016075Biological ProcessrRNA catabolic processInterproscan
GO:0017091Molecular FunctionmRNA 3'-UTR AU-rich region bindingInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034473Biological ProcessU1 snRNA 3'-end processingInterproscan
GO:0034475Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0034476Biological ProcessU5 snRNA 3'-end processingInterproscan
GO:0043928Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071028Biological Processnuclear mRNA surveillanceInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071042Biological Processnuclear polyadenylation-dependent mRNA catabolic processInterproscan
GO:0005227Molecular Functioncalcium-activated cation channel activityInterproscan
GO:0009566Biological ProcessfertilizationInterproscan
GO:0030317Biological Processflagellated sperm motilityInterproscan
GO:0036128Cellular ComponentCatSper complexInterproscan
GO:0048240Biological Processsperm capacitationInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0034972Biological Processobsolete histone H3-R26 methylationInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0015935Cellular Componentsmall ribosomal subunitInterproscan
GO:0022627Cellular Componentcytosolic small ribosomal subunitInterproscan
GO:0042274Biological Processribosomal small subunit biogenesisInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0008083Molecular Functiongrowth factor activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14383SLC5A3, SMIT; solute carrier family 5 (sodium/myo-inositol cotransporter), member 3-Porphyrin metabolismko00860deepkoala
Chromosome and associated proteinsko03036deepkoala
Ribosomeko03011deepkoala
Messenger RNA biogenesisko03019deepkoala
Transportersko02000deepkoala

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