Gene detail

Detailed information of g3166.t1 in Acropora digitifera

Genomic Location: chr2Alt:9318454...9333030
NR annotation: XP_015777235.1, PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3166.t1

ATGCTTGTTCTTTGTGCCGTAATTTTGAATGCTTTGCTTTTGCAAGGTGTGAAAGCGAAAGGGGAGTCTGCTTTGGCGAAGACATGCCCACCCCCAGACGTTCCTGAAAATGCCAAGCTTGTTAGAAAAGTAACAAATTTCACTATTGGATCTACGGTTAAGATGGCGTGTGATACAGGGTTTTTTCGCAGAGGAAGGCGCTCGCGAATAAAATGTCTACCAAATAGGCAATGGACCAAGTCTAATTTCTCTTGCGTGGCTAGGAGCTGTGGGGATCCTGGATCACCCACCACAGGCGGAGAGCGACATGGTTGGTCATTTCAATTCCGCGATACTGTCAATTTTACCTGCTTTGCGGGATATGTACTTGTGGGCCCAAAAACAAGAACCTGTTTGGCCACAGGCTGGAGTGAAGTGCAGCCATCGTGTTCACCTGTACAATGTAAAGAGCCGCCCAAAGTAGTTGGAGCATCAGTAATGGAAAGCACTAACGGTTTTTTGTACGAAGCACAAGTGCATTACATGTGCCGTCAGGGTTACCAAATGCAAGGATCAGCAACGCTAACCTGTGGACCAAATGGAGAATGGATTGGAGAACCTCCAAACTGCAAAGTCATAGTCTGCAAAGATCCCGGTATACCACTACACGGCTCAAGAAATGGAAGCAAGGTTTTCAATTACAAAGCAAAGATGTCTTTTCAGTGTAATAAAGGCTTCATACTATATGGGGCACACGAGCGAACCTGTAGTGAAGACGGAAAGTGGACTGGACCGCAACCCTATTGTGTTGAATGTGCCGGGGTCGGTACACCTGTTTTCATTAGAAAAGGTTACTTCTTCACGCATGGACTAGTTAAAGCGAAAAGGGGAAATGTTGTGACGGTTTCAACTGCACCCAAAGATAAGGAAAAGAATGTTGTTATACTTGGGCGAGGAACACAACATTATGCAATCGTGGAGGATAAGGTTCCATCTCCGAAATATGTTTTCATTGGAACAAGAGTTCTTGCCATGCATGTAGATAATGAAAGGTACGCTTTTGCTGTGGTTACGAGGATCAAAGACGGAAAATATTGGGTGAGATTTGAGCATTACAACCAAAGAAGAAAACTTACCATCGACTTTATTAGGATTTTATATCCACCCACGTTTTGTGCAACATGTCCTGCACCAGACGAGCCATATAGTGGCATCAGATTAATATCCTCTGGGGAATTTATACCTGGCAGCGAGGTGATGTACGTTTGTGAAACTAACACCGAACTAGTCGGATCAGACAAACGGAAGTGTTTACCGAGTGGATTATGGACTGGACAACAACCCACATGCCAGGCCATTGGATGTCGTGGTATTGACGTACTTCCACCTGAAAACGGCAAGAGAGTAGGAAACGATTTTAGTGTTGGAAGCACTGTTACGTTCTCTTGCAACCAAGGCTATGAACTTATAGGAGATACAGTATCGACCTGTCAGACAGACCGGCAATGGTCTAGAATGGTTCCCATTTGCAAAGACCTCTGCGATAGACAGCAGTGTGAACCTTGGAAGAAGTGCGTTTATAACATCAGCAGCGAAAGCACCACGTGTGAGTGCCGTAAATCCACAGACTGCTTGGGACGTTTCCAGCAAATTTGTGGTTCGGATGCAAAGACCTACAATAACGATTGCATCATGAAGGCTACCGCTTGCAGGGAGGGAAGAACCATTGAAAAGGTTGCAAACGGCTCCTGTACCCCTGCATCAATCTGCCAAATTGTCCCCGAGAGCGTTTGCCGAGGATTTTTCAGAAACTACTATTATAATACAACTTCTCGAGAATGCAAGGAAATAATTGCAGGCGGTTGTCATCCAAGTGGATGGAATGGCTTTAGCACCAAACAAGAATGCAACAGAACGTGCTCAGTGAATATTTGTGATCAACCTGTTGACCCAGGACCATGCTTTGCCAATGTGTCTCACTGGGCGTTCAACCGAAAAGCAGGGCGTTGCAAACTATTCAAGTACGGAGGTTGCTTTGGAAACGAAAACAATTTTGACTCCGAGAAAAAGTGCAATCAAAGATGCCCTCCAACCGCTCCAGCTAAACGAAAAAAAGTGTGTGGAAAATGTCCTAGCAGAAAAATTATTGAAGTCTGCAAAGAGAGCACCTTTGGTTTCATTGGCAAAGTGGAACAAGAACTCCCAAATGACCCAACGATGAAGCGAGCACGATATAGGGTAATAATCGACGAGGTCCTTCAATTAAAAAACAGCACCGGGTCCCTTTCTGCGAGGAGCGCAGTCATTAGCGTCCCAAATGGCAAGGCTCTGACCTGCCCCTGCACTTCATTTCCAAAATTAAAGTTTGTTCTCTTGGGCAAAGTCGTGCTTGATTCATCTGAGTCGGCGACAGAATTGAATATTATCGTCAAACGTCCTGCAGTTGTTCGGAAGTGGAACAAGGAGTTCGTTAAAAAATTGCGTAAATCTTGTGCTAAATATTTCACTGATTTGGAAACAGCTGAATAG

Transcript

chr2Alt.g3166.t1

ACGTTTCCCCTTTTAATGCATGTCAAATTCCTCGTAGACGAAAGGAAGGTCCTGTCAAAACAAGCCAATCAATCAATCAATCAATCAATCTTTCACACCAGCAAGATTAAATTGGATTTGCTGATGGAGGGCCCCAAGAGATTTCACAAGTTTCACATTTTTTCTTGTGCCTTCCTTTAGAAGAAGAAATAGTGTCTTGTTCAGTACAGTAAAGCAGCGCTCTGTTGCCATGCTTGTTCTTTGTGCCGTAATTTTGAATGCTTTGCTTTTGCAAGGTGTGAAAGCGAAAGGGGAGTCTGCTTTGGCGAAGACATGCCCACCCCCAGACGTTCCTGAAAATGCCAAGCTTGTTAGAAAAGTAACAAATTTCACTATTGGATCTACGGTTAAGATGGCGTGTGATACAGGGTTTTTTCGCAGAGGAAGGCGCTCGCGAATAAAATGTCTACCAAATAGGCAATGGACCAAGTCTAATTTCTCTTGCGTGGCTAGGAGCTGTGGGGATCCTGGATCACCCACCACAGGCGGAGAGCGACATGGTTGGTCATTTCAATTCCGCGATACTGTCAATTTTACCTGCTTTGCGGGATATGTACTTGTGGGCCCAAAAACAAGAACCTGTTTGGCCACAGGCTGGAGTGAAGTGCAGCCATCGTGTTCACCTGTACAATGTAAAGAGCCGCCCAAAGTAGTTGGAGCATCAGTAATGGAAAGCACTAACGGTTTTTTGTACGAAGCACAAGTGCATTACATGTGCCGTCAGGGTTACCAAATGCAAGGATCAGCAACGCTAACCTGTGGACCAAATGGAGAATGGATTGGAGAACCTCCAAACTGCAAAGTCATAGTCTGCAAAGATCCCGGTATACCACTACACGGCTCAAGAAATGGAAGCAAGGTTTTCAATTACAAAGCAAAGATGTCTTTTCAGTGTAATAAAGGCTTCATACTATATGGGGCACACGAGCGAACCTGTAGTGAAGACGGAAAGTGGACTGGACCGCAACCCTATTGTGTTGAATGTGCCGGGGTCGGTACACCTGTTTTCATTAGAAAAGGTTACTTCTTCACGCATGGACTAGTTAAAGCGAAAAGGGGAAATGTTGTGACGGTTTCAACTGCACCCAAAGATAAGGAAAAGAATGTTGTTATACTTGGGCGAGGAACACAACATTATGCAATCGTGGAGGATAAGGTTCCATCTCCGAAATATGTTTTCATTGGAACAAGAGTTCTTGCCATGCATGTAGATAATGAAAGGTACGCTTTTGCTGTGGTTACGAGGATCAAAGACGGAAAATATTGGGTGAGATTTGAGCATTACAACCAAAGAAGAAAACTTACCATCGACTTTATTAGGATTTTATATCCACCCACGTTTTGTGCAACATGTCCTGCACCAGACGAGCCATATAGTGGCATCAGATTAATATCCTCTGGGGAATTTATACCTGGCAGCGAGGTGATGTACGTTTGTGAAACTAACACCGAACTAGTCGGATCAGACAAACGGAAGTGTTTACCGAGTGGATTATGGACTGGACAACAACCCACATGCCAGGCCATTGGATGTCGTGGTATTGACGTACTTCCACCTGAAAACGGCAAGAGAGTAGGAAACGATTTTAGTGTTGGAAGCACTGTTACGTTCTCTTGCAACCAAGGCTATGAACTTATAGGAGATACAGTATCGACCTGTCAGACAGACCGGCAATGGTCTAGAATGGTTCCCATTTGCAAAGACCTCTGCGATAGACAGCAGTGTGAACCTTGGAAGAAGTGCGTTTATAACATCAGCAGCGAAAGCACCACGTGTGAGTGCCGTAAATCCACAGACTGCTTGGGACGTTTCCAGCAAATTTGTGGTTCGGATGCAAAGACCTACAATAACGATTGCATCATGAAGGCTACCGCTTGCAGGGAGGGAAGAACCATTGAAAAGGTTGCAAACGGCTCCTGTACCCCTGCATCAATCTGCCAAATTGTCCCCGAGAGCGTTTGCCGAGGATTTTTCAGAAACTACTATTATAATACAACTTCTCGAGAATGCAAGGAAATAATTGCAGGCGGTTGTCATCCAAGTGGATGGAATGGCTTTAGCACCAAACAAGAATGCAACAGAACGTGCTCAGTGAATATTTGTGATCAACCTGTTGACCCAGGACCATGCTTTGCCAATGTGTCTCACTGGGCGTTCAACCGAAAAGCAGGGCGTTGCAAACTATTCAAGTACGGAGGTTGCTTTGGAAACGAAAACAATTTTGACTCCGAGAAAAAGTGCAATCAAAGATGCCCTCCAACCGCTCCAGCTAAACGAAAAAAAGTGTGTGGAAAATGTCCTAGCAGAAAAATTATTGAAGTCTGCAAAGAGAGCACCTTTGGTTTCATTGGCAAAGTGGAACAAGAACTCCCAAATGACCCAACGATGAAGCGAGCACGATATAGGGTAATAATCGACGAGGTCCTTCAATTAAAAAACAGCACCGGGTCCCTTTCTGCGAGGAGCGCAGTCATTAGCGTCCCAAATGGCAAGGCTCTGACCTGCCCCTGCACTTCATTTCCAAAATTAAAGTTTGTTCTCTTGGGCAAAGTCGTGCTTGATTCATCTGAGTCGGCGACAGAATTGAATATTATCGTCAAACGTCCTGCAGTTGTTCGGAAGTGGAACAAGGAGTTCGTTAAAAAATTGCGTAAATCTTGTGCTAAATATTTCACTGATTTGGAAACAGCTGAATAGTTTTTGGTTTTTGTTTTTTGGTGTCTTAAATTACGAACTAATTGTAGTGATGTTTAAGTACCTAAGAATTCTCGAAATCTAAACTAGTAAACGTTATGAATGCCAAATGAAGATCAAATGAAAACATTTGCACGTCAAATAATTGACTTGGTGTATCGAGATTTAAATAAAGATTCTGCCTTATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96PZ7	CUB and sushi domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CSMD1 PE=1 SV=3
A0A1D5NSM8	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Danio rerio OX=7955 GN=svep1 PE=1 SV=1
P0C6B8	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Svep1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00050 all species →	Kazal_1	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00014 all species →	Kunitz_BPTI	Kunitz/Bovine pancreatic trypsin inhibitor domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR036880 all species →	Homologous_superfamily	Pancreatic trypsin inhibitor Kunitz domain superfamily	Interproscan
IPR002223 all species →	Domain	Pancreatic trypsin inhibitor Kunitz domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR020901 all species →	Conserved_site	Proteinase inhibitor I2, Kunitz, conserved site	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR050350 all species →	Family	Complement & Cell Adhesion Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19325 all species →	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004867 all species →	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g3166.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g3166.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

187.5Max TPM

130.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	130.41	187.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	187.53
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	173.95
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	168.28
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	167.62
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	166.43
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	166.13
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	164.64
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	162.45
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	159.14
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	151.18
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	150.14
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	149.19
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	148.35
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	145.71
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	143.65
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	141.89
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	141.51
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	140.81
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	139.33
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	137.88
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	137.19
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	136.35
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	136.16
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	136.10
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	135.49
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	134.12
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	130.84
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	122.68
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	99.07
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	98.87
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	96.39
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	94.19
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	90.98
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	89.56
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	79.77
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	76.09
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	68.08
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	65.29
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	52.77

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.