Gene detail

Detailed information of g32.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: HHC25714.1, ABC transporter ATP-binding protein [Desulfobacterales bacterium]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33916	Uncharacterized ABC transporter ATP-binding protein YejF OS=Escherichia coli (strain K12) OX=83333 GN=yejF PE=1 SV=1
A9CKL2	Peptidoglycan transport ATP-binding protein YejF OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=yejF PE=3 SV=1
Q53194	Probable peptide ABC transporter ATP-binding protein y4tS OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a01400 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000122 (this species only)
Orthogroup (gene family)	OG0000376 (this species only)
Orthogroup (gene family)	OG0001033 (this species only)
Orthogroup (gene family)	OG0002920 (this species only)
Orthogroup (gene family)	OG0003543 (this species only)
Orthogroup (gene family)	OG0003844 (this species only)
Orthogroup (gene family)	OG0006019 (this species only)
Orthogroup (gene family)	OG0007175 (this species only)
Orthogroup (gene family)	OG0007542 (this species only)
Orthogroup (gene family)	OG0009067 (this species only)
Orthogroup (gene family)	OG0009449 (this species only)
Orthogroup (gene family)	OG0018255 (this species only)
Orthogroup (gene family)	OG0040039 (this species only)
Orthogroup (gene family)	OG0059559 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan
PF02807 all species →	ATP-gua_PtransN	ATP:guanido phosphotransferase, N-terminal domain	Domain	Interproscan
PF19016 all species →	DUF5745	Domain of unknown function (DUF5745)	Domain	Interproscan
PF01217 all species →	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan
PF21361 all species →	Sina_ZnF	Sina, zinc finger	Domain	Interproscan
PF03145 all species →	Sina_TRAF	Sina, TRAF-like domain	Domain	Interproscan
PF11841 all species →	ELMO_ARM	ELMO, armadillo-like helical domain	Repeat	Interproscan
PF04727 all species →	ELMO_CED12	ELMO/CED-12 family	Family	Interproscan
PF16457 all species →	PH_12	Pleckstrin homology domain	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF09804 all species →	DENND11	DENN domain-containing protein 11	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050145 all species →	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR036802 all species →	Homologous_superfamily	ATP:guanido phosphotransferase, N-terminal domain superfamily	Interproscan
IPR022414 all species →	Domain	ATP:guanido phosphotransferase, catalytic domain	Interproscan
IPR022413 all species →	Domain	ATP:guanido phosphotransferase, N-terminal	Interproscan
IPR000749 all species →	Family	ATP:guanido phosphotransferase	Interproscan
IPR014746 all species →	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR026619 all species →	Family	Centrosomal protein of 95kDa	Interproscan
IPR044039 all species →	Domain	Domain of unknown function DUF5745	Interproscan
IPR022775 all species →	Domain	AP complex, mu/sigma subunit	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR016635 all species →	Family	Adaptor protein complex, sigma subunit	Interproscan
IPR000804 all species →	Conserved_site	Clathrin adaptor complex, small chain	Interproscan
IPR004162 all species →	Family	E3 ubiquitin-protein ligase SINA-like, animal	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013010 all species →	Domain	Zinc finger, SIAH-type	Interproscan
IPR018121 all species →	Domain	Seven-in-absentia protein, TRAF-like domain	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR024574 all species →	Domain	ELMO, armadillo-like helical domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR006816 all species →	Domain	ELMO domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR050868 all species →	Family	Engulfment and cell motility domain-containing protein	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050281 all species →	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR051731 all species →	Family	DENND11/AVL9 guanine nucleotide exchange factors	Interproscan
IPR018626 all species →	Family	Protein LCHN/Anr2	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050319 all species →	Family	ABC Transporter ATP-Binding	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR034418 all species →	Domain	Probable RNA-binding protein 19, RNA recognition motif 1	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050374 all species →	Family	RRT5/SRSF/Splicing Factor SR	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050 all species →	CALCIUM BINDING PROTEIN	Interproscan
PTHR11547 all species →	ARGININE OR CREATINE KINASE	Interproscan
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR22545 all species →	UNCHARACTERIZED	Interproscan
PTHR11753 all species →	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	Interproscan
PTHR45877 all species →	E3 UBIQUITIN-PROTEIN LIGASE SIAH2	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR12771 all species →	ENGULFMENT AND CELL MOTILITY	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR10742 all species →	FLAVIN MONOAMINE OXIDASE	Interproscan
PTHR31017 all species →	LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED	Interproscan
PTHR43776 all species →	TRANSPORT ATP-BINDING PROTEIN	Interproscan
PTHR23003 all species →	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0030234 all species →	Molecular Function	enzyme regulator activity	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0004111 all species →	Molecular Function	creatine kinase activity	Interproscan
GO:0046314 all species →	Biological Process	phosphocreatine biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0007508 all species →	Biological Process	larval heart development	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0061343 all species →	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10823	oppF; oligopeptide transport system ATP-binding protein	-	Transporters	ko02000	deepkoala
K12366	ELMO1, CED12; engulfment and cell motility protein 1	-	Bacterial invasion of epithelial cells	ko05100	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.