Gene detail

Detailed information of g320.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAE7817977.1, htrA, partial [Symbiodinium necroappetens]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q169H6	Elongation factor P OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=efp PE=3 SV=1
Q1GF47	Elongation factor P OS=Ruegeria sp. (strain TM1040) OX=292414 GN=efp PE=3 SV=1
Q11DG9	Elongation factor P OS=Chelativorans sp. (strain BNC1) OX=266779 GN=efp PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000026 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001356 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002643 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003141 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003957 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003979 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005046 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005975 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011120 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0012037 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015211 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015554 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00683 all species →	TB	TB domain	Family	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00406 all species →	ADK	Adenylate kinase	Domain	Interproscan
PF07539 all species →	UTP20_N	U3 small nucleolar RNA-associated protein 20, N-terminal	Domain	Interproscan
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan
PF01132 all species →	EFP	Elongation factor P (EF-P) OB domain	Domain	Interproscan
PF05433 all species →	Rick_17kDa_Anti	Glycine zipper 2TM domain	Family	Interproscan
PF09285 all species →	Elong-fact-P_C	Elongation factor P, C-terminal	Domain	Interproscan
PF08207 all species →	EFP_N	Elongation factor P (EF-P) KOW-like domain	Domain	Interproscan
PF20826 all species →	PHD_5	PhD finger domain	Domain	Interproscan
PF00562 all species →	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF13625 all species →	Helicase_C_3	Helicase conserved C-terminal domain	Domain	Interproscan
PF06664 all species →	MIG-14_Wnt-bd	Wnt-binding factor required for Wnt secretion	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR017878 all species →	Domain	TB domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR036773 all species →	Homologous_superfamily	TGF-beta binding (TB) domain superfamily	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR052560 all species →	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR033690 all species →	Conserved_site	Adenylate kinase, conserved site	Interproscan
IPR006266 all species →	Family	UMP-CMP kinase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000850 all species →	Family	Adenylate kinase/UMP-CMP kinase	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR011430 all species →	Domain	U3 small nucleolar RNA-associated protein 20, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR052575 all species →	Family	Small subunit processome component 20	Interproscan
IPR001059 all species →	Domain	Translation elongation factor P/YeiP, central	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR011768 all species →	Family	Translation elongation factor P	Interproscan
IPR010201 all species →	Family	HflK	Interproscan
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan
IPR013852 all species →	Conserved_site	Translation elongation factor P/YeiP, conserved site	Interproscan
IPR008816 all species →	Domain	Glycine zipper 2TM domain	Interproscan
IPR010200 all species →	Family	HflC	Interproscan
IPR015365 all species →	Domain	Elongation factor P, C-terminal	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR013185 all species →	Domain	Translation elongation factor, KOW-like	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR037033 all species →	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR007120 all species →	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR015712 all species →	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR014724 all species →	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR001161 all species →	Family	Helicase XPB/Ssl2	Interproscan
IPR032830 all species →	Domain	Helicase XPB/Ssl2, N-terminal domain	Interproscan
IPR050615 all species →	Family	ATP-dependent DNA Helicase	Interproscan
IPR040416 all species →	Family	Transmembrane protein 181	Interproscan
IPR047843 all species →	Domain	Wntless-like, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039 all species →	FIBRILLIN-RELATED	Interproscan
PTHR36688 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23359 all species →	NUCLEOTIDE KINASE	Interproscan
PTHR17695 all species →	UNCHARACTERIZED	Interproscan
PTHR42911 all species →	MODULATOR OF FTSH PROTEASE HFLC	Interproscan
PTHR46462 all species →	UPSET, ISOFORM A	Interproscan
PTHR20856 all species →	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan
PTHR11274 all species →	RAD25/XP-B DNA REPAIR HELICASE	Interproscan
PTHR31918 all species →	TRANSMEMBRANE PROTEIN 181	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0004127 all species →	Molecular Function	(d)CMP kinase activity	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0006221 all species →	Biological Process	pyrimidine nucleotide biosynthetic process	Interproscan
GO:0009041 all species →	Molecular Function	UMP/dUMP kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0019205 all species →	Molecular Function	nucleobase-containing compound kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006225 all species →	Biological Process	UDP biosynthetic process	Interproscan
GO:0033862 all species →	Molecular Function	UMP kinase activity	Interproscan
GO:0046705 all species →	Biological Process	CDP biosynthetic process	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019867 all species →	Cellular Component	outer membrane	Interproscan
GO:0052547 all species →	Biological Process	regulation of peptidase activity	Interproscan
GO:0043043 all species →	Biological Process	peptide biosynthetic process	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0032549 all species →	Molecular Function	ribonucleoside binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0000112 all species →	Cellular Component	nucleotide-excision repair factor 3 complex	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0097550 all species →	Cellular Component	transcription preinitiation complex	Interproscan
GO:0015643 all species →	Molecular Function	toxic substance binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13800	CMPK1, UMPK; UMP-CMP kinase	EC:2.7.4.14	Drug metabolism - other enzymes	ko00983	deepkoala
K21771	CCNB3; G2/mitotic-specific cyclin-B3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.