Detailed information of g320.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAE7817977.1, htrA, partial [Symbiodinium necroappetens]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q169H6Elongation factor P OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=efp PE=3 SV=1
Q1GF47Elongation factor P OS=Ruegeria sp. (strain TM1040) OX=292414 GN=efp PE=3 SV=1
Q11DG9Elongation factor P OS=Chelativorans sp. (strain BNC1) OX=266779 GN=efp PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF00683TBTB domainFamilyInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00406ADKAdenylate kinaseDomainInterproscan
PF07539UTP20_NU3 small nucleolar RNA-associated protein 20, N-terminalDomainInterproscan
PF01145Band_7SPFH domain / Band 7 familyFamilyInterproscan
PF01132EFPElongation factor P (EF-P) OB domainDomainInterproscan
PF05433Rick_17kDa_AntiGlycine zipper 2TM domainFamilyInterproscan
PF09285Elong-fact-P_CElongation factor P, C-terminalDomainInterproscan
PF08207EFP_NElongation factor P (EF-P) KOW-like domainDomainInterproscan
PF20826PHD_5PhD finger domainDomainInterproscan
PF00562RNA_pol_Rpb2_6RNA polymerase Rpb2, domain 6DomainInterproscan
PF13625Helicase_C_3Helicase conserved C-terminal domainDomainInterproscan
PF06664MIG-14_Wnt-bdWnt-binding factor required for Wnt secretionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR017878DomainTB domainInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR036773Homologous_superfamilyTGF-beta binding (TB) domain superfamilyInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR052560FamilyRNA-directed DNA polymerase, mobile elementInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR033690Conserved_siteAdenylate kinase, conserved siteInterproscan
IPR006266FamilyUMP-CMP kinaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000850FamilyAdenylate kinase/UMP-CMP kinaseInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR011430DomainU3 small nucleolar RNA-associated protein 20, N-terminalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR052575FamilySmall subunit processome component 20Interproscan
IPR001059DomainTranslation elongation factor P/YeiP, centralInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR011768FamilyTranslation elongation factor PInterproscan
IPR010201FamilyHflKInterproscan
IPR036013Homologous_superfamilyBand 7/SPFH domain superfamilyInterproscan
IPR008991Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR001107DomainBand 7 domainInterproscan
IPR013852Conserved_siteTranslation elongation factor P/YeiP, conserved siteInterproscan
IPR008816DomainGlycine zipper 2TM domainInterproscan
IPR010200FamilyHflCInterproscan
IPR015365DomainElongation factor P, C-terminalInterproscan
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR013185DomainTranslation elongation factor, KOW-likeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR037033Homologous_superfamilyDNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyInterproscan
IPR007120DomainDNA-directed RNA polymerase, subunit 2, hybrid-binding domainInterproscan
IPR015712FamilyDNA-directed RNA polymerase, subunit 2Interproscan
IPR014724Homologous_superfamilyRNA polymerase Rpb2, OB-foldInterproscan
IPR001161FamilyHelicase XPB/Ssl2Interproscan
IPR032830DomainHelicase XPB/Ssl2, N-terminal domainInterproscan
IPR050615FamilyATP-dependent DNA HelicaseInterproscan
IPR040416FamilyTransmembrane protein 181Interproscan
IPR047843DomainWntless-like, transmembrane domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24039FIBRILLIN-RELATEDInterproscan
PTHR36688ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23359NUCLEOTIDE KINASEInterproscan
PTHR17695UNCHARACTERIZEDInterproscan
PTHR42911MODULATOR OF FTSH PROTEASE HFLCInterproscan
PTHR46462UPSET, ISOFORM AInterproscan
PTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan
PTHR11274RAD25/XP-B DNA REPAIR HELICASEInterproscan
PTHR31918TRANSMEMBRANE PROTEIN 181Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0004127Molecular Function(d)CMP kinase activityInterproscan
GO:0006207Biological Process'de novo' pyrimidine nucleobase biosynthetic processInterproscan
GO:0006221Biological Processpyrimidine nucleotide biosynthetic processInterproscan
GO:0009041Molecular FunctionUMP/dUMP kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0019205Molecular Functionnucleobase-containing compound kinase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006225Biological ProcessUDP biosynthetic processInterproscan
GO:0033862Molecular FunctionUMP kinase activityInterproscan
GO:0046705Biological ProcessCDP biosynthetic processInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0003746Molecular Functiontranslation elongation factor activityInterproscan
GO:0006414Biological Processtranslational elongationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0019867Cellular Componentouter membraneInterproscan
GO:0052547Biological Processregulation of peptidase activityInterproscan
GO:0043043Biological Processpeptide biosynthetic processInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001056Molecular FunctionRNA polymerase III activityInterproscan
GO:0005666Cellular ComponentRNA polymerase III complexInterproscan
GO:0032549Molecular Functionribonucleoside bindingInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0006289Biological Processnucleotide-excision repairInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0000112Cellular Componentnucleotide-excision repair factor 3 complexInterproscan
GO:0005675Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0097550Cellular Componenttranscription preinitiation complexInterproscan
GO:0015643Molecular Functiontoxic substance bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13800CMPK1, UMPK; UMP-CMP kinaseEC:2.7.4.14
Chromosome and associated proteinsko03036deepkoala
Drug metabolism - other enzymesko00983deepkoala

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