Gene detail

Detailed information of g321.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_163675269.1, type III PLP-dependent enzyme [Magnetospirillum aberrantis]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27120	Ornithine decarboxylase 1 OS=Xenopus laevis OX=8355 GN=odc1-a PE=2 SV=1
P09057	Ornithine decarboxylase OS=Rattus norvegicus OX=10116 GN=Odc1 PE=1 SV=1
P27119	Ornithine decarboxylase OS=Mus pahari OX=10093 GN=Odc1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only)
Orthogroup (gene family)	OG0000013 (this species only)
Orthogroup (gene family)	OG0002116 (this species only)
Orthogroup (gene family)	OG0006474 (this species only)
Orthogroup (gene family)	OG0006768 (this species only)
Orthogroup (gene family)	OG0009031 (this species only)
Orthogroup (gene family)	OG0011383 (this species only)
Orthogroup (gene family)	OG0013888 (this species only)
Orthogroup (gene family)	OG0017755 (this species only)
Orthogroup (gene family)	OG0019887 (this species only)
Orthogroup (gene family)	OG0080331 (this species only)
Orthogroup (gene family)	OG0170857 (this species only)
Orthogroup (gene family)	OG0171932 (this species only)
Orthogroup (gene family)	OG0172312 (this species only)
Orthogroup (gene family)	OG0174196 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04158 all species →	Sof1	Sof1-like domain	Family	Interproscan
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF08216 all species →	CTNNBL	Catenin-beta-like, Arm-motif containing nuclear	Repeat	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF06954 all species →	Resistin	Resistin	Family	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF02401 all species →	LYTB	LytB protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037764 all species →	Family	Protein CEBPZOS	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051733 all species →	Family	WD repeat-containing DCAF13/WDSOF1	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR007287 all species →	Domain	Sof1-like protein	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR040396 all species →	Family	Polyadenylate-binding protein-interacting protein 2-like	Interproscan
IPR050125 all species →	Family	G-protein coupled receptor opsins	Interproscan
IPR002433 all species →	Family	Ornithine decarboxylase	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR022653 all species →	Binding_site	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	Interproscan
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR000183 all species →	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR013180 all species →	Domain	Beta-catenin-like protein 1, N-terminal	Interproscan
IPR039678 all species →	Family	Beta-catenin-like protein 1	Interproscan
IPR036262 all species →	Homologous_superfamily	Resistin-like superfamily	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR009714 all species →	Family	Resistin-like molecule hormone family	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR003451 all species →	Family	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38001 all species →	PROTEIN CEBPZOS	Interproscan
PTHR22851 all species →	U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN	Interproscan
PTHR13154 all species →	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2	Interproscan
PTHR24240 all species →	OPSIN	Interproscan
PTHR11482 all species →	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	Interproscan
PTHR14978 all species →	BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN	Interproscan
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan
PTHR30426 all species →	4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0000900 all species →	Molecular Function	mRNA regulatory element binding translation repressor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0030371 all species →	Molecular Function	translation repressor activity	Interproscan
GO:0045947 all species →	Biological Process	negative regulation of translational initiation	Interproscan
GO:0004586 all species →	Molecular Function	ornithine decarboxylase activity	Interproscan
GO:0006596 all species →	Biological Process	polyamine biosynthetic process	Interproscan
GO:0033387 all species →	Biological Process	putrescine biosynthetic process from ornithine	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005179 all species →	Molecular Function	hormone activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0019288 all species →	Biological Process	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0050992 all species →	Biological Process	dimethylallyl diphosphate biosynthetic process	Interproscan
GO:0051745 all species →	Molecular Function	4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01581	E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase	EC:4.1.1.17	Efferocytosis	ko04148	deepkoala
K11806	DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.