Detailed information of g321.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_163675269.1, type III PLP-dependent enzyme [Magnetospirillum aberrantis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P27120Ornithine decarboxylase 1 OS=Xenopus laevis OX=8355 GN=odc1-a PE=2 SV=1
P09057Ornithine decarboxylase OS=Rattus norvegicus OX=10116 GN=Odc1 PE=1 SV=1
P27119Ornithine decarboxylase OS=Mus pahari OX=10093 GN=Odc1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF04158Sof1Sof1-like domain FamilyInterproscan
PF00278Orn_DAP_Arg_deCPyridoxal-dependent decarboxylase, C-terminal sheet domainDomainInterproscan
PF02784Orn_Arg_deC_NPyridoxal-dependent decarboxylase, pyridoxal binding domainDomainInterproscan
PF08216CTNNBLCatenin-beta-like, Arm-motif containing nuclearRepeatInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF06954ResistinResistinFamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF02401LYTBLytB proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037764FamilyProtein CEBPZOSInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR051733FamilyWD repeat-containing DCAF13/WDSOF1Interproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR007287DomainSof1-like proteinInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR040396FamilyPolyadenylate-binding protein-interacting protein 2-likeInterproscan
IPR050125FamilyG-protein coupled receptor opsinsInterproscan
IPR002433FamilyOrnithine decarboxylaseInterproscan
IPR009006Homologous_superfamilyAlanine racemase/group IV decarboxylase, C-terminalInterproscan
IPR022653Binding_siteOrn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding siteInterproscan
IPR029066Homologous_superfamilyPLP-binding barrelInterproscan
IPR022643DomainOrn/DAP/Arg decarboxylase 2, C-terminalInterproscan
IPR000183FamilyOrnithine/DAP/Arg decarboxylaseInterproscan
IPR022644DomainOrn/DAP/Arg decarboxylase 2, N-terminalInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR013180DomainBeta-catenin-like protein 1, N-terminalInterproscan
IPR039678FamilyBeta-catenin-like protein 1Interproscan
IPR036262Homologous_superfamilyResistin-like superfamilyInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR009714FamilyResistin-like molecule hormone familyInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR003451Family4-hydroxy-3-methylbut-2-enyl diphosphate reductaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR38001PROTEIN CEBPZOSInterproscan
PTHR22851U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEINInterproscan
PTHR13154POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2Interproscan
PTHR24240OPSINInterproscan
PTHR11482ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASEInterproscan
PTHR14978BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEINInterproscan
PTHR24023COLLAGEN ALPHAInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR304264-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0000900Molecular FunctionmRNA regulatory element binding translation repressor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0030371Molecular Functiontranslation repressor activityInterproscan
GO:0045947Biological Processnegative regulation of translational initiationInterproscan
GO:0004586Molecular Functionornithine decarboxylase activityInterproscan
GO:0006596Biological Processpolyamine biosynthetic processInterproscan
GO:0033387Biological Processputrescine biosynthetic process from ornithineInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005179Molecular Functionhormone activityInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0019288Biological Processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathwayInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0050992Biological Processdimethylallyl diphosphate biosynthetic processInterproscan
GO:0051745Molecular Function4-hydroxy-3-methylbut-2-enyl diphosphate reductase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11806DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13-Efferocytosisko04148deepkoala
Ubiquitin systemko04121deepkoala

TOP