Gene detail

Detailed information of g323.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_218044616.1, 1-deoxy-D-xylulose-5-phosphate synthase [Aestuariispira insulae]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q89RW1	1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=dxs PE=3 SV=1
Q2RR29	1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=dxs2 PE=3 SV=1
B6IRB5	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=dxs PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000304 (this species only)
Orthogroup (gene family)	OG0001033 (this species only)
Orthogroup (gene family)	OG0003816 (this species only)
Orthogroup (gene family)	OG0005512 (this species only)
Orthogroup (gene family)	OG0005919 (this species only)
Orthogroup (gene family)	OG0008147 (this species only)
Orthogroup (gene family)	OG0008819 (this species only)
Orthogroup (gene family)	OG0009976 (this species only)
Orthogroup (gene family)	OG0012158 (this species only)
Orthogroup (gene family)	OG0013888 (this species only)
Orthogroup (gene family)	OG0017228 (this species only)
Orthogroup (gene family)	OG0027651 (this species only)
Orthogroup (gene family)	OG0048258 (this species only)
Orthogroup (gene family)	OG0171667 (this species only)
Orthogroup (gene family)	OG0172684 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02780 all species →	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan
PF13292 all species →	DXP_synthase_N	1-deoxy-D-xylulose-5-phosphate synthase	Family	Interproscan
PF01217 all species →	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan
PF04148 all species →	Erv26	Transmembrane adaptor Erv26	Family	Interproscan
PF02296 all species →	Alpha_adaptin_C	Alpha adaptin AP2, C-terminal domain	Family	Interproscan
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF01553 all species →	Acyltransferase	Acyltransferase	Family	Interproscan
PF14291 all species →	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF00209 all species →	SNF	Sodium:neurotransmitter symporter family	Family	Interproscan
PF02492 all species →	cobW	CobW/HypB/UreG, nucleotide-binding domain	Domain	Interproscan
PF07683 all species →	CobW_C	Cobalamin synthesis protein cobW C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009014 all species →	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR020826 all species →	Binding_site	Transketolase binding site	Interproscan
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR005477 all species →	Family	Deoxyxylulose-5-phosphate synthase	Interproscan
IPR033248 all species →	Domain	Transketolase, C-terminal domain	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR044733 all species →	Family	AP-1 complex subunit sigma	Interproscan
IPR022775 all species →	Domain	AP complex, mu/sigma subunit	Interproscan
IPR016635 all species →	Family	Adaptor protein complex, sigma subunit	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR009028 all species →	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR012295 all species →	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR007277 all species →	Family	Svp26/Tex261	Interproscan
IPR003164 all species →	Domain	Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR026818 all species →	Family	Adenomatous polyposis coli (APC) family	Interproscan
IPR045252 all species →	Domain	Lysophosphatidylcholine acyltransferase LPCAT1-like	Interproscan
IPR002123 all species →	Domain	Phospholipid/glycerol acyltransferase	Interproscan
IPR025398 all species →	Domain	Domain of unknown function DUF4371	Interproscan
IPR006580 all species →	Domain	Zinc finger, TTF-type	Interproscan
IPR000175 all species →	Family	Sodium:neurotransmitter symporter	Interproscan
IPR037272 all species →	Homologous_superfamily	Sodium:neurotransmitter symporter superfamily	Interproscan
IPR050125 all species →	Family	G-protein coupled receptor opsins	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036627 all species →	Homologous_superfamily	CobW-like, C-terminal domain superfamily	Interproscan
IPR003495 all species →	Domain	CobW/HypB/UreG, nucleotide-binding domain	Interproscan
IPR011629 all species →	Domain	Zinc chaperone CobW-like, C-terminal	Interproscan
IPR051316 all species →	Family	Zinc-regulated GTPase metalloprotein activator	Interproscan
IPR012824 all species →	Family	Zinc chaperone CobW	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43322 all species →	1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED	Interproscan
PTHR11753 all species →	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	Interproscan
PTHR13144 all species →	TEX261 PROTEIN	Interproscan
PTHR12607 all species →	ADENOMATOUS POLYPOSIS COLI PROTEIN FAMILY	Interproscan
PTHR23063 all species →	PHOSPHOLIPID ACYLTRANSFERASE	Interproscan
PTHR45749 all species →	-	Interproscan
PTHR11616 all species →	SODIUM/CHLORIDE DEPENDENT TRANSPORTER	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR24240 all species →	OPSIN	Interproscan
PTHR13748 all species →	COBW-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0008661 all species →	Molecular Function	1-deoxy-D-xylulose-5-phosphate synthase activity	Interproscan
GO:0016114 all species →	Biological Process	terpenoid biosynthetic process	Interproscan
GO:0016744 all species →	Molecular Function	transketolase or transaldolase activity	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030121 all species →	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030134 all species →	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0097020 all species →	Molecular Function	COPII receptor activity	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0007026 all species →	Biological Process	negative regulation of microtubule depolymerization	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030178 all species →	Biological Process	negative regulation of Wnt signaling pathway	Interproscan
GO:0030877 all species →	Cellular Component	beta-catenin destruction complex	Interproscan
GO:0045295 all species →	Molecular Function	gamma-catenin binding	Interproscan
GO:0045595 all species →	Biological Process	regulation of cell differentiation	Interproscan
GO:0045732 all species →	Biological Process	positive regulation of protein catabolic process	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan
GO:0004366 all species →	Molecular Function	glycerol-3-phosphate O-acyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0019432 all species →	Biological Process	triglyceride biosynthetic process	Interproscan
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009236 all species →	Biological Process	cobalamin biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01558	WNT16; wingless-type MMTV integration site family, member 16	-	Glycosaminoglycan binding proteins	ko00536	deepkoala
K05048	SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20	-	Transporters	ko02000	deepkoala
K12394	AP1S1_2; AP-1 complex subunit sigma 1/2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.