Detailed information of g323.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_218044616.1, 1-deoxy-D-xylulose-5-phosphate synthase [Aestuariispira insulae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q89RW11-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=dxs PE=3 SV=1
Q2RR291-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=dxs2 PE=3 SV=1
B6IRB51-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=dxs PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02779Transket_pyrTransketolase, pyrimidine binding domainDomainInterproscan
PF02780Transketolase_CTransketolase, C-terminal domainDomainInterproscan
PF13292DXP_synthase_N1-deoxy-D-xylulose-5-phosphate synthaseFamilyInterproscan
PF01217Clat_adaptor_sClathrin adaptor complex small chainDomainInterproscan
PF04148Erv26Transmembrane adaptor Erv26FamilyInterproscan
PF02296Alpha_adaptin_CAlpha adaptin AP2, C-terminal domainFamilyInterproscan
PF00514ArmArmadillo/beta-catenin-like repeatRepeatInterproscan
PF01553AcyltransferaseAcyltransferaseFamilyInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF00209SNFSodium:neurotransmitter symporter familyFamilyInterproscan
PF02492cobWCobW/HypB/UreG, nucleotide-binding domainDomainInterproscan
PF07683CobW_CCobalamin synthesis protein cobW C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009014Homologous_superfamilyTransketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain IIInterproscan
IPR020826Binding_siteTransketolase binding siteInterproscan
IPR005475DomainTransketolase-like, pyrimidine-binding domainInterproscan
IPR005477FamilyDeoxyxylulose-5-phosphate synthaseInterproscan
IPR033248DomainTransketolase, C-terminal domainInterproscan
IPR029061Homologous_superfamilyThiamin diphosphate-binding foldInterproscan
IPR044733FamilyAP-1 complex subunit sigmaInterproscan
IPR022775DomainAP complex, mu/sigma subunitInterproscan
IPR016635FamilyAdaptor protein complex, sigma subunitInterproscan
IPR011012Homologous_superfamilyLongin-like domain superfamilyInterproscan
IPR013041Homologous_superfamilyClathrin adaptor, appendage, Ig-like subdomain superfamilyInterproscan
IPR009028Homologous_superfamilyCoatomer/calthrin adaptor appendage, C-terminal subdomainInterproscan
IPR012295Homologous_superfamilyTBP domain superfamilyInterproscan
IPR007277FamilySvp26/Tex261Interproscan
IPR003164DomainClathrin adaptor, alpha-adaptin, appendage, C-terminal subdomainInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR000225RepeatArmadilloInterproscan
IPR026818FamilyAdenomatous polyposis coli (APC) familyInterproscan
IPR045252DomainLysophosphatidylcholine acyltransferase LPCAT1-likeInterproscan
IPR002123DomainPhospholipid/glycerol acyltransferaseInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR006580DomainZinc finger, TTF-typeInterproscan
IPR000175FamilySodium:neurotransmitter symporterInterproscan
IPR037272Homologous_superfamilySodium:neurotransmitter symporter superfamilyInterproscan
IPR050125FamilyG-protein coupled receptor opsinsInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036627Homologous_superfamilyCobW-like, C-terminal domain superfamilyInterproscan
IPR003495DomainCobW/HypB/UreG, nucleotide-binding domainInterproscan
IPR011629DomainZinc chaperone CobW-like, C-terminalInterproscan
IPR051316FamilyZinc-regulated GTPase metalloprotein activatorInterproscan
IPR012824FamilyZinc chaperone CobWInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR433221-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATEDInterproscan
PTHR11753ADAPTOR COMPLEXES SMALL SUBUNIT FAMILYInterproscan
PTHR13144TEX261 PROTEINInterproscan
PTHR12607ADENOMATOUS POLYPOSIS COLI PROTEIN FAMILYInterproscan
PTHR23063PHOSPHOLIPID ACYLTRANSFERASEInterproscan
PTHR45749-Interproscan
PTHR11616SODIUM/CHLORIDE DEPENDENT TRANSPORTERInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR24240OPSINInterproscan
PTHR13748COBW-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0008661Molecular Function1-deoxy-D-xylulose-5-phosphate synthase activityInterproscan
GO:0016114Biological Processterpenoid biosynthetic processInterproscan
GO:0016744Molecular Functiontransketolase or transaldolase activityInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030121Cellular ComponentAP-1 adaptor complexInterproscan
GO:0035615Molecular Functionclathrin adaptor activityInterproscan
GO:0015031Biological Processprotein transportInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0030134Cellular ComponentCOPII-coated ER to Golgi transport vesicleInterproscan
GO:0030173Cellular Componentobsolete integral component of Golgi membraneInterproscan
GO:0030176Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan
GO:0097020Molecular FunctionCOPII receptor activityInterproscan
GO:0030131Cellular Componentclathrin adaptor complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0001708Biological Processcell fate specificationInterproscan
GO:0005881Cellular Componentcytoplasmic microtubuleInterproscan
GO:0007026Biological Processnegative regulation of microtubule depolymerizationInterproscan
GO:0007389Biological Processpattern specification processInterproscan
GO:0007399Biological Processnervous system developmentInterproscan
GO:0008013Molecular Functionbeta-catenin bindingInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0016342Cellular Componentcatenin complexInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0030178Biological Processnegative regulation of Wnt signaling pathwayInterproscan
GO:0030877Cellular Componentbeta-catenin destruction complexInterproscan
GO:0045295Molecular Functiongamma-catenin bindingInterproscan
GO:0045595Biological Processregulation of cell differentiationInterproscan
GO:0045732Biological Processpositive regulation of protein catabolic processInterproscan
GO:0090090Biological Processnegative regulation of canonical Wnt signaling pathwayInterproscan
GO:0004366Molecular Functionglycerol-3-phosphate O-acyltransferase activityInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0019432Biological Processtriglyceride biosynthetic processInterproscan
GO:0008374Molecular FunctionO-acyltransferase activityInterproscan
GO:0016746Molecular Functionacyltransferase activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0009236Biological Processcobalamin biosynthetic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01558WNT16; wingless-type MMTV integration site family, member 16-Transportersko02000deepkoala
Membrane traffickingko04131deepkoala
Glycosaminoglycan binding proteinsko00536deepkoala

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