Gene detail

Detailed information of g324.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PIW27718.1, farnesyl-diphosphate synthase [Rhodospirillales bacterium CG15_BIG_FIL_POST_REV_8_21_14_020_66_15]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P22939	Farnesyl diphosphate synthase OS=Escherichia coli (strain K12) OX=83333 GN=ispA PE=1 SV=1
B1XJV9	Geranylgeranyl pyrophosphate synthase OS=Picosynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=crtE PE=1 SV=1
Q08291	Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus OX=1422 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00348	polyprenyl_synt	Polyprenyl synthetase	Domain	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF02494	HYR	HYR domain	Domain	Interproscan
PF14580	LRR_9	Leucine-rich repeat	Repeat	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF05362	Lon_C	Lon protease (S16) C-terminal proteolytic domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR008949	Homologous_superfamily	Isoprenoid synthase domain superfamily	Interproscan
IPR000092	Family	Polyprenyl synthetase	Interproscan
IPR033749	Conserved_site	Polyprenyl synthetase, conserved site	Interproscan
IPR053378	Family	Prenyl diphosphate synthase	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR003410	Domain	HYR domain	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR043555	Family	Sushi repeat-containing protein SRPX-like	Interproscan
IPR043313	Family	Leucine-rich melanocyte differentiation-associated protein	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR050401	Family	Cyclic nucleotide synthase	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR008269	Domain	Peptidase S16, Lon proteolytic domain	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR027065	Family	Lon protease	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12697	PBS LYASE HEAT-LIKE PROTEIN	Interproscan
PTHR43281	FARNESYL DIPHOSPHATE SYNTHASE	Interproscan
PTHR46343	HYR DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46282	LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN	Interproscan
PTHR11920	GUANYLYL CYCLASE	Interproscan
PTHR10046	ATP DEPENDENT LON PROTEASE FAMILY MEMBER	Interproscan
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008612	Biological Process	peptidyl-lysine modification to peptidyl-hypusine	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0019135	Molecular Function	deoxyhypusine monooxygenase activity	Interproscan
GO:0004659	Molecular Function	prenyltransferase activity	Interproscan
GO:0008299	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0001653	Molecular Function	peptide receptor activity	Interproscan
GO:0004016	Molecular Function	adenylate cyclase activity	Interproscan
GO:0004383	Molecular Function	guanylate cyclase activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006182	Biological Process	cGMP biosynthetic process	Interproscan
GO:0007168	Biological Process	receptor guanylyl cyclase signaling pathway	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0030163	Biological Process	protein catabolic process	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12812	DDX39B, UAP56, SUB2; ATP-dependent RNA helicase UAP56/SUB2	EC:5.6.2.7	Prenyltransferases	ko01006	deepkoala
K12812	DDX39B, UAP56, SUB2; ATP-dependent RNA helicase UAP56/SUB2	EC:5.6.2.7	Spliceosome	ko03041	deepkoala