Gene detail

Detailed information of g3241.t1 in Montipora capitata

Genomic Location: Sc0000054:495668...511980
NR annotation: XP_029212276.2, NAD(P) transhydrogenase, mitochondrial-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3241.t1

atgacaatgttcctgcgacctggcctcagtgtagtaagacgattccatggacagtctttactaggaaggaagagtgtattgggtatctatggaagagtaacctgttcacccaagtgttccgcttttaaggatccacatttctatccaaggctttttgctgggaccagcagattttgtgcaaatgattccaaagaaaaaattcctccagaggcaataactgttattcgttataatgagctatcaatcggagttccaaaggaaattcatgagggggagagaagagtagctttgtctcctgaagcagtcaagaagttaatagaacaaggttttaaagttgttgtggaatcaggtgcaggtgtaggagcaaagtttcttgatgctgattatgctgccattggagcagaagtgaagacagtaaaggatgcatttgcttctgatattgttttcaaggtacgaccacctgagaaaaaccaagcctttggcattcatgaagctgatctcatgaaggaaggtggtaaacttgtcagtttcttgtacccagcccaaaataaagacttgcttgacattttagccaagagaaaaatcactgcttttagtgttgactgtatcccacggattagtcgtgcccaatcttttgatgccttgagctcaatggccaacattgcgggctacaaagcagtcatagaagctgccaatgtgtttggaagattcttcacaggacagatcactgctgctggaaaggtaccccctgcaaaggtacttgtattaggtgctggtgggtatgcaactgagatgtctgaagagttcaaaaaagctcaagagttgttattggccaagcagtgtaaagaaattgatattgtaatctcaacagcgctgatcccaggaaaaccagccccaacccttataactaagaaaatggtggaatcaatgaaacctgggtcagtgattgtggatttagcagcagaagctggaggaaactgtgagctcacgaaggctggagagctctacaatcacaatggagttaatattattggatacactgatctaccaagtcgccttccaacccaatcaagtactctttacgccaataatctgacaaagtacctcctatctatgggtgggaagggagaatttgcaattgatctcaatgatgacgttgttcgtggctccattgtgcttcaagatggcaaaatgatgtggcctcctccacccattgagatgccagctccttccgcacccaaacaaaaagggttagtcaaaccaccagagcaaacacctctagcagctgctgcttgggaatctggcctgacaacagctggtctaggctcacttcttgctctgggagttgcctcacccaatcctgcttttgctacaatggtgactaccttctcgcttgctggtgtgattggttacaaagtcgtgtggggcgtgacccctgctctccactccccactcatgtctgtcactaatgccatatcaggtattacagcagcagggggcctggtgttgatgggaggcgccttgctacccaacaacacggctacttcactagcagcagtcgcgactctggtgtcgtgtatcaacatcactggtggatttatcatcacaaagaggatgttggatatgttcaagagaccaggggaccctccagagtacacttatctatatgccatacccgcagtcgctgttcttggtggatatgccgctggtaagatcgcaggctatcctgatatggatcagatggcttacttggcctcgtctctgtgctgtgttggtgcgcttggtggcctctcaacccaaacatcagccagacaaggaaatgctctcggggttggcatgggggcaacaatgggagcccttgcaccttctcatgatgtgttgacccagatggcagccatgatgggtgtcggaggtaccataggcgcgatcatatcaagccgcatcgcggtcagcgaccttcctcagcttgtcgcagccttccacagttttgtgggtcttgctgctgttctaaccgccattgctaagtaccttgctgatgtggatctctttgccgatgaccccgctggcaatgtccacaaagcagcgatctttctgggcactttcattggcggcgtgaccttcactggatcccttgtggcgtttggaaagctccacggcttgctagattcccgcgcgctcagtctaccagggaagaatctgctgaatattggcatggcgctggccaatgttggagcaatgggttggtttatggctactgatagtgctgctgtaggaatacccatgttggggaccacagctgcactgtcttccattatgggtgttcacatgacagcatcaatcggtggtgctgacatgcctgtggtcataacagttctcaacagctacagtggctgggctctctgtgccgagggtttcatgttaaataacgatttactcaccattgttggagcacttgtcggcttttccggaggcatcttgtcttacatcatgtgcaaagctatgaacagatctctggctaacgtgctgtttggcgggtacggcactttatctaccggtaagtcactaaataattctgttctttctcgaactaacagataa

Transcript

g3241.t1

ATGACAATGTTCCTGCGACCTGGCCTCAGTGTAGTAAGACGATTCCATGGACAGTCTTTACTAGGAAGGAAGAGTGTATTGGGTATCTATGGAAGAGTAACCTGTTCACCCAAGTGTTCCGCTTTTAAGgATCCACATTTCTATCCAAGGCTTTTTGCTGGGACCAGCAGATTTTGTGCAAATGATTCCAAAGaaaaaattccTCCAGAGGCAATAACTGTTATTCGTTATAATGAGCTATCAATCGGAGTTCCAAAGGAAATTCATGAGGGGGAGAGAAGAGTAGCTTTGTCTCCTGAAGCAGTCAAGAAGTTAATAGAACAAGGTTTTAAAGTTGTTGTGGAATCAGGTGCAGGTGTAGGAGCAAAGTTTCTTGATGCTGATTATGCTGCCATTGGAGCAGAAGTGAAGACAGTAAAGGATGCATTTGCTTCTGatattgttttcaaggTACGACCACCTGAGAAAAACCAAGCCTTTGGCATTCATGAAGCTGATCTCATGAAGGAAGGTGGTAAACTTGTCAGTTTCTTGTACCCAGCCCAAAATAAAGACTTGCTTGACATTTTAGCCAAGAGAAAAATCACTGCTTTTAGTGTTGACTGTATCCCACGGATTAGTCGTGCCCAATCTTTTGATGCCTTGAGCTCAATGGCCAACATTGCGGGCTACAAAGCAGTCATAGAAGCTGCCAATGTGTTTGGAAGATTCTTCACAGGACAGATCACTGCTGCTGGAAAGGTACCCCCTGCAAAGGTACTTGTATTAGgTGCTGGTGGGTATGCAACTGAGATGTCTGAAGAGTTCAAAAAAGCTCAAGAGTTGTTATTGGCCAAGCAGTGTAAAGAAATTGATATTGTAATCTCAACAGCGCTGATCCCAGGAAAACCAGCCCCAACCCTTATAACTAAGAAAATGGTGGAATCAATGAAACCTGGGTCAGTGATTGTGGATTTAGCAGCAGAAGCTGGAGGAAACTGTGAGCTCACGAAGGCTGGAGAGCTCTACAATCACAATGGAGTTAATATTATTGGATACACTGATCTACCAAGTCGCCTTCCAACCCAATCAAGTACTCTTTACGCCAATAATCTGACAAAGTACCTCCTATCTATGGGTGGGAAGGGAGAATTTGCAATTGATCTCAATGATGACGTTGTTCGTGGCTCCATTGTGCTTCAAGATGGCAAAATGATGTGGCCTCCTCCACCCATTGAGATGCCAGCTCCTTCCGCACCCAAACAAAAAGGGTTAGTCAAACCACCAGAGCAAACACCTCTAGCAGCTGCTGCTTGGGAATCTGGCCTGACAACAGCTGGTCTAGGCTCACTTCTTGCTCTGGGAGTTGCCTCACCCAATCCTGCTTTTGCTACAATGGTGACTACCTTCTCGCTTGCTGGTGTGATTGGTTACAAAGTCGTGTGGGGCGTGACCCCTGCTCTCCACTCCCCACTCATGTCTGTCACTAATGCCATATCAGGTATTACAGCAGCAGGGGGCCTGGTGTTGATGGGAGGCGCCTTGCTACCCAACAACACGGCTACTTCACTAGCAGCAGTCGCGACTCTGGTGTCGTGTATCAACATCACTGGTGGATTTATCATCACAAAGAGGATGTTGGATATGTTCAAGAGACCAGGGGACCCTCCAGAGTACACTTATCTATATGCCATACCCGCAGTCGCTGTTCTTGGTGGATATGCCGCTGGTAAGATCGCAGGCTATCCTGATATGGATCAGATGGCTTACTTGGCCTCGTCTCTGTGCTGTGTTGGTGCGCTTGGTGGCCTCTCAACCCAAACATCAGCCAGACAAGGAAATGCTCTCGGGGTTGGCATGGGGGCAACAATGGGAGCCCTTGCACCTTCTCATGATGTGTTGACCCAGATGGCAGCCATGATGGGTGTCGGAGGTACCATAGGCGCGATCATATCAAGCCGCATCGCGGTCAGCGACCTTCCTCAGCTTGTCGCAGCCTTCCACAGTTTTGTGGGTCTTGCTGCTGTTCTAACCGCCATTGCTAAGTACCTTGCTGATGTGGATCTCTTTGCCGATGACCCCGCTGGCAATGTCCACAAAGCAGCGATCTTTCTGGGCACTTTCATTGGCGGCGTGACCTTCACTGGATCCCTTGTGGCGTTTGGAAAGCTCCACGGCTTGCTAGATTCCCGCGCGCTCAGTCTACCAGGGAAGAATCTGCTGAATATTGGCATGGCGCTGGCCAATGTTGGAGCAATGGGTTGGTTTATGGCTACTGATAGTGCTGCTGTAGGAATACCCATGTTGGGGACCACAGCTGCACTGTCTTCCATTATGGGTGTTCACATGACAGCATCAATCGGTGGTGCTGACATGCCTGTGGTCATAACAGTTCTCAACAGCTACAGTGGCTGGGCTCTCTGTGCCGAGGGTTTCATGTTAAATAACGATTTACTCACCATTGTTGGAGCACTTGTCGGCTTTTCCGGAGGCATCTTGTCTTACATCATGTGCAAAGCTATGAACAGATCTCTGGCTAACGTGCTGTTTGGCGGGTACGGCACTTTATCTACCGGTAAGTCACTAAATAATTCTGTTCTTTCTCGAACTAACAGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11024	NAD(P) transhydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=NNT PE=1 SV=3
W5PFI3	NAD(P) transhydrogenase, mitochondrial OS=Ovis aries OX=9940 GN=NNT PE=1 SV=2
Q13423	NAD(P) transhydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=NNT PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003192 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05222 all species →	AlaDh_PNT_N	Alanine dehydrogenase/PNT, N-terminal domain	Domain	Interproscan
PF12769 all species →	PNTB_4TM	4TM region of pyridine nucleotide transhydrogenase, mitoch	Family	Interproscan
PF02233 all species →	PNTB	NAD(P) transhydrogenase beta subunit	Family	Interproscan
PF01262 all species →	AlaDh_PNT_C	Alanine dehydrogenase/PNT, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007886 all species →	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal	Interproscan
IPR024605 all species →	Domain	NAD(P) transhydrogenase, alpha subunit, C-terminal	Interproscan
IPR007698 all species →	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR034300 all species →	Domain	NADP transhydrogenase beta-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10160 all species →	NAD(P) TRANSHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006740 all species →	Biological Process	NADPH regeneration	Interproscan
GO:0008746 all species →	Molecular Function	obsolete NAD(P)+ transhydrogenase activity	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00323	NNT; proton-translocating NAD(P)+ transhydrogenase	EC:7.1.1.1	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g3241.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

119.4Max TPM

50.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	48.90	113.79
whole organisms · low pH treatment	15	15	49.35	105.44
whole organisms · extra low pH treatment pH treatment	12	12	54.91	119.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	113.79
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	105.57
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	100.82
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	93.69
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	58.80
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	56.61
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	56.05
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	49.67
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	42.64
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	38.77
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	37.32
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	36.90
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	32.73
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	32.69
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	31.65
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	28.61
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	24.04
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	23.51
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	23.18
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	22.05
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	17.77
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	105.44
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	104.94
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	98.92
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	62.04
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	52.67
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	48.12
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	47.12
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	38.17
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	31.90
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	31.51
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	31.03
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	30.13
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	23.02
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	18.96
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	16.26
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	119.42
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	109.36
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	105.60
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	59.48
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	42.33
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	37.13
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	36.32
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	32.64
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	31.65
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	30.65
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	28.79
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	25.52

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.