Gene detail

Detailed information of g3257.t1 in Montipora capitata

Genomic Location: Sc0000054:790652...798928
NR annotation: XP_029212224.2, phospholipid-transporting ATPase VD-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

g3257.t1

atggaagttgtcaagttattccaagtttatttcatctccaatgacctgcagttgtattatgaagaaatggatcaaccagtgctatgccgtgcactcaatatcaacgaggatctcggacaaatcaaatatgtcttctcagacaagacagggacattgactgagaataaaatggtatttaagaggtgtacgatcggaggaaggaacttcgcccacctggacacgcttgactctgtggactccaggcctttagctgctgatcaaatgtaccgtcaaatttcagagggatccaaggatgcttcgatttattgggacaaagaacttgccgatgtgattgactcacacagtagagtgggcttctataacggacccgaaagctcttttttgagggagttctttatactgctcgctctttgcaatacagtggttgtagcgaggaggaaacattccccaccggaaagtaataggaattcaggaagaacagatgaaacggatttgtcttgcgaggcggagaacgatcgtgttcctctagatttaagcgattatcgtaccgttgacgatcatttgactcctggctacggttcagtgcacgcttgctctagggatcgtcattctgcgtggggaaacgtggctgtttccgcaacaccattgaaacattcttgtgaaactttgaccaagagacccagaaatagtggttcatctataatagaatctatggaagccagtggagtgtcctcagaaataatctacgaggccgagtcgcccgacgaagctgcgcttgtgaaagcagcatgtttgtatggctataaactcttatcccgtagtcctgacaaagtcacactatttattcccggcgaaggcgaagtcacttacgaagttcttcatgtgctgccgtttgattcgtcacggaagcggatgtcagttattgttcgacgtcaggatgatagcagcatagtgatgtattgcaaaggtgccgactcggctgtgcttccaaagctagaacgaaccaatcggcagtttatggctgatgacgttgatgctggtgacgggaacggaggtgtcaagcgtgacagcaggggctcgttagtggaggagactgtgcatcatttagatttgtacgcgagagatggtctgagaacgttatgcatggcgaggaggaatttatcagatgaagattatgaggaatggttagaacagcacagacgcgccgaaactgatcttcgtgacagagaaaggctcgttcatctgtcagcgcataaactggaaagtaacatggagcttcttggtgccacaggtatcgaggaccgtttgcaagatggggtccctgagacaattgccaggttacgcgagggaggcttgaaagtgtgggttcttacgggagacaaacaggaaaccgctattaacgtggcgttttcctgtagacttctggacaacaacatgcacagggtgataataaatgcaaagtccaaggaagattgcaatggtcagatcacgtcttggttggctcatttccagtccgaagttgttagcgttggcagtgacaactctgtgtcaggtcaaataagttcatcggcgttccctgcaatccagtcgttaggactcataattgatggccgaacactaatgcacgcattggaagaacccttgaatgtaaagttcttagatttagcaagacgttgtcaagttgtgttgtgttgtagagcgacaccttatcaaaagtcagcagttgttcagttggtcagaaatggtctgaaaactatgacgttagcaattggtgacggtgccaatgacgtaagcatgatccaaatggcggatgtcggtattggtatttccggtcaggagggaatgcaagcagttatggcaagcgacttcgctattggacggtttaagttcttatctcgcctcctgttggttcatggccactggtgctatgatcgtatcacaaagatgttcttgtatttcttcttcaaaaacgcgatgtttgtttttgtcctattttggttccaactgtacaatggcttttccggttcaaatgctattgatgacctatctttgattttcttcaaccttctgttcaccgccgtacctcctgttatctgcggaatcctggacaaagatgtccctgatccgatactaacagcaagacccgacctctacaaatcaggccaaaatagtgaggtggatacctatgcttttattcacagctttctagtaggaaaagagatgctattagggaattga

Transcript

g3257.t1

ATGGAAGTTGTCAAGTTATTCcaagtttatttcatctccaatgaCCTGCAGTTGTATTATGAAGAAATGGATCAACCAGTGCTATGCCGTGCACTCAATATCAACGAGGATCTCGGACAAATCAAATATGTCTTCTCAGACAAGACAGGGACATTGACTGAGAATAAAATGGTATTTAAGAGGTGTACGATCGGAGGAAGGAACTTCGCCCACCTGGACACGCTTGACTCTGTGGACTCCAGGCCTTTAGCTGCTGATCAAATGTACCGTCAAATTTCAGAGGGATCCAAGGATGCTTCGATTTATTGGGACAAAGAACTTGCCGATGTGATTGACTCACACAGTAGAGTGGGCTTCTATAACGGACCCGAAAGCTCTTTTTTGAGGGAGTTCTTTATACTGCTCGCTCTTTGCAATACAGTGGTTGTAGCGAGGAGGAAACATTCCCCACCGGAAAGTAATAGGAATTCAGGAAGAACAGATGAAACGGATTTGTCTTGCGAGGCGGAGAACGATCGTGTTCCTCTAGATTTAAGCGATTATCGTACCGTTGACGATCATTTGACTCCTGGCTACGGTTCAGTGCACGCTTGCTCTAGGGATCGTCATTCTGCGTGGGGAAACGTGGCTGTTTCCGCAACACCATTGAAACATTCTTGTGAAACTTTGACCAAGAGACCCAGAAATAGTGGTTCATCTATAATAGAATCTATGGAAGCCAGTGGAGTGTCCTCAGAAATAATCTACGAGGCCGAGTCGCCCGACGAAGCTGCGCTTGTGAAAGCAGCATGTTTGTATGGCTATAAACTCTTATCCCGTAGTCCTGACAAAGTCACACTATTTATTCCCGGCGAAGGCGAAGTCACTTACGAAGTTCTTCATGTGCTGCCGTTTGATTCGTCACGGAAGCGGATGTCAGTTATTGTTCGACGTCAGGATGATAGCAGCATAGTGATGTATTGCAAAGGTGCCGACTCGGCTGTGCTTCCAAAGCTAGAACGAACCAATCGGCAGTTTATGGCTGATGACGTTGATGCTGGTGACGGGAACGGAGGTGTCAAGCGTGACAGCAGGGGCTCGTTAGTGGAGGAGACTGTGCATCATTTAGATTTGTACGCGAGAGATGGTCTGAGAACGTTATGCATGGCGAGGAGGAATTTATCAGATGAAGATTATGAGGAATGGTTAGAACAGCACAGACGCGCCGAAACTGATCTTCGTGACAGAGAAAGGCTCGTTCATCTGTCAGCGCATAAACTGGAAAGTAACATGGAGCTTCTTGGTGCCACAGGTATCGAGGACCGTTTGCAAGATGGGGTCCCTGAGACAATTGCCAGGTTACGCGAGGGAGGCTTGAAAGTGTGGGTTCTTACGGGAGACAAACAGGAAACCGCTATTAACGTGGCGTTTTCCTGTAGACTTCTGGACAACAACATGCACAGGGTGATAATAAATGCAAAGTCCAAGGAAGATTGCAATGGTCAGATCACGTCTTGGTTGGCTCATTTCCAGTCCGAAGTTGTTAGCGTTGGCAGTGACAACTCTGTGTCAGGTCAAATAAGTTCATCGGCGTTCCCTGCAATCCAGTCGTTAGGACTCATAATTGATGGCCGAACACTAATGCACGCATTGGAAGAACCCTTGAATGTAAAGTTCTTAGATTTAGCAAGACGTTGTCAAGTTGTGTTGTGTTGTAGAGCGACACCTTATCAAAAGTCAGCAGTTGTTCAGTTGGTCAGAAATGGTCTGAAAACTATGACGTTAGCAATTGGTGACGGTGCCAATGACGTAAGCATGATCCAAATGGCGGATGTCGGTATTGGTATTTCCGGTCAGGAGGGAATGCAAGCAGTTATGGCAAGCGACTTCGCTATTGGACGGTTTAAGTTCTTATCTCGCCTCCTGTTGGTTCATGGCCACTGGTGCTATGATCGTATCACAAAGATGTTCTTGTATTTCTTCTTCAAAAACGCGatgtttgtttttgtccTATTTTGGTTCCAACTGTACAATGGCTTTTCCGGTTCAAATGCTATTGATGACCTATCTTTGATTTTCTTCAACCTTCTGTTCACCGCCGTACCTCCTGTTATCTGCGGAATCCTGGACAAAGATGTCCCTGATCCGATACTAACAGCAAGACCCGACCTCTACAAATCAGGCCAAAATAGTGAGGTGGATACCTATGCTTTTATTCACAGCTTTCTAGTAGGAAAAGAGATGCTATTAGGGAATTGA

Protein

Uniprot

Uniprot term	Description
O60312	Phospholipid-transporting ATPase VA OS=Homo sapiens OX=9606 GN=ATP10A PE=1 SV=2
O54827	Phospholipid-transporting ATPase VA OS=Mus musculus OX=10090 GN=Atp10a PE=1 SV=4
Q9P241	Phospholipid-transporting ATPase VD OS=Homo sapiens OX=9606 GN=ATP10D PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16212	PhoLip_ATPase_C	Phospholipid-translocating P-type ATPase C-terminal	Family	Interproscan
PF13246	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001757	Family	P-type ATPase	Interproscan
IPR032630	Domain	P-type ATPase, C-terminal	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR006539	Family	P-type ATPase, subfamily IV	Interproscan
IPR023299	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR044492	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24092	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0015914	Biological Process	phospholipid transport	Interproscan
GO:0140326	Molecular Function	ATPase-coupled intramembrane lipid transporter activity	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0045332	Biological Process	phospholipid translocation	Interproscan