Gene detail

Detailed information of g3268.t1 in Tripedalia maipoensis

Genomic Location: scaffold_13:17520742...17542474
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003448 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR047176 all species →	Family	FERM domain-containing protein 4A/B	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR000798 all species →	Family	Ezrin/radixin/moesin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46079 all species →	FERM DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0090162 all species →	Biological Process	establishment of epithelial cell polarity	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0008092 all species →	Molecular Function	cytoskeletal protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03016	RPABC3, RPB8, POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.