Detailed information of g327.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_085616357.1, phage terminase large subunit [Thalassospira alkalitolerans]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O00602Ficolin-1 OS=Homo sapiens OX=9606 GN=FCN1 PE=1 SV=2
Q92752Tenascin-R OS=Homo sapiens OX=9606 GN=TNR PE=1 SV=3
Q8BYI9Tenascin-R OS=Mus musculus OX=10090 GN=Tnr PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01176eIF-1aTranslation initiation factor 1A / IF-1DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00168C2C2 domainDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF04857CAF1CAF1 family ribonucleaseFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR006196DomainRNA-binding domain, S1, IF1 typeInterproscan
IPR001253FamilyTranslation initiation factor 1A (eIF-1A)Interproscan
IPR039294FamilyProbable RNA-binding protein EIF1ADInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR045161FamilyU3 small nucleolar RNA-associated protein 18Interproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR000008DomainC2 domainInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR006941FamilyRibonuclease CAF1Interproscan
IPR051181FamilyCAF1 family poly(A)-specific ribonucleasesInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR024855FamilyUNC79Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR006517DomainPhage terminase large subunit-like, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21641TRANSLATION INITIATION FACTOR-RELATEDInterproscan
PTHR18359WD-REPEAT PROTEIN-RELATEDInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR15092POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1Interproscan
PTHR21696UNCHARACTERIZEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003743Molecular Functiontranslation initiation factor activityInterproscan
GO:0006413Biological Processtranslational initiationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034388Cellular ComponentPwp2p-containing subcomplex of 90S preribosomeInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0004535Molecular Functionpoly(A)-specific ribonuclease activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19025AP5Z1, SPG48; AP-5 complex subunit zeta-1-DNA repair and recombination proteinsko03400deepkoala

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