Detailed information of g328.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBX9619538.1, regulatory protein GemA [Hyphomicrobiales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q38494GemA protein OS=Escherichia phage Mu OX=2681603 GN=gemA PE=1 SV=2
P24796GemA protein OS=Escherichia phage D108 OX=665033 GN=gemA PE=3 SV=2
O70497Ficolin-2 OS=Mus musculus OX=10090 GN=Fcn2 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00589Phage_integrasePhage integrase familyFamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03803ScramblaseScramblase DomainInterproscan
PF06464DMAP_bindingDMAP1-binding DomainDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF06252GemABacteriophage Mu, GemA proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR002104DomainIntegrase, catalytic domainInterproscan
IPR013762Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR011010Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR005552FamilyScramblaseInterproscan
IPR010506DomainDMAP1-binding domainInterproscan
IPR042099Homologous_superfamilyANL, N-terminal domainInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR003609DomainPAN/Apple domainInterproscan
IPR009363FamilyBacteriophage Mu, Gp16Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20938UNCHARACTERIZEDInterproscan
PTHR35617PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR23248PHOSPHOLIPID SCRAMBLASE-RELATEDInterproscan
PTHR22754DISCO-INTERACTING PROTEIN 2 DIP2 -RELATEDInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016180Biological ProcesssnRNA processingInterproscan
GO:0032039Cellular Componentintegrator complexInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0017121Biological Processplasma membrane phospholipid scramblingInterproscan
GO:0017128Molecular Functionphospholipid scramblase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13141INTS4; integrator complex subunit 4-GTP-binding proteinsko04031deepkoala
Lectinsko04091deepkoala
Spliceosomeko03041deepkoala

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