Gene detail

Detailed information of g329.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCE7915840.1, transposase [Nitrosomonas sp. PRO4]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9GL27	T-box transcription factor T OS=Canis lupus familiaris OX=9615 GN=TBXT PE=2 SV=1
P79777	T-box transcription factor T OS=Gallus gallus OX=9031 GN=TBXT PE=2 SV=1
P24781	T-box transcription factor T OS=Xenopus laevis OX=8355 GN=tbxt PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	T-box
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF09299	Mu-transpos_C	Mu transposase, C-terminal	Domain	Interproscan
PF11363	DUF3164	Protein of unknown function (DUF3164)	Family	Interproscan
PF00907	T-box	T-box	Domain	Interproscan
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF06155	GBBH-like_N	Gamma-butyrobetaine hydroxylase-like, N-terminal	Domain	Interproscan
PF04547	Anoctamin	Calcium-activated chloride channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR052797	Family	Regulatory Factors in Gene Expression and Cell Death	Interproscan
IPR037588	Family	Target of rapamycin complex subunit LST8	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR015378	Domain	Transposase-like, Mu, C-terminal	Interproscan
IPR021505	Family	Bacteriophage B3, Orf6	Interproscan
IPR009004	Homologous_superfamily	Transposase, Mu, C-terminal	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR002070	Family	Transcription factor, Brachyury	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan
IPR010376	Domain	Gamma-butyrobetaine hydroxylase-like, N-terminal	Interproscan
IPR042098	Homologous_superfamily	Taurine dioxygenase TauD-like superfamily	Interproscan
IPR038492	Homologous_superfamily	GBBH-like, N-terminal domain superfamily	Interproscan
IPR049452	Domain	Anoctamin, transmembrane domain	Interproscan
IPR007632	Family	Anoctamin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR33936	PROTEIN CBG17840	Interproscan
PTHR21459	UNCHARACTERIZED	Interproscan
PTHR19842	G BETA-LIKE PROTEIN GBL	Interproscan
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan
PTHR12308	ANOCTAMIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031929	Biological Process	TOR signaling	Interproscan
GO:0031931	Cellular Component	TORC1 complex	Interproscan
GO:0031932	Cellular Component	TORC2 complex	Interproscan
GO:0032956	Biological Process	regulation of actin cytoskeleton organization	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001707	Biological Process	mesoderm formation	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0003007	Biological Process	heart morphogenesis	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005254	Molecular Function	chloride channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:1902476	Biological Process	chloride transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10172	BRA, T; brachyury protein	-	Transcription factors	ko03000	deepkoala