Gene detail

Detailed information of g3296.t2 in Tripedalia maipoensis

Genomic Location: scaffold_13:18900933...18950432
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3296.t2

ATGGCTTCTGCTAGCAGCTTGCCAGACTTTGAAGCCATCCTTCAAAGAGGTGCTGTCACTGAGCCTAGACCGCTTGTAAGGAGCAGACGGGGGGACGAGGTTAATGAAATCAGTTTGAGTGCTGCTGTCAAGTCAGCTACACAGGGGAAAAAAGTTGCATCAGTTAAAAACAAGTCCAATCGCCCTGTCACGGAGAAGATGAAAACCAGCAGTAGCAAAAGAAGTGGTGGTTCTAAGTATGATGATGGTGTCTCGGCTGGGTCTTCTACATCTGGACCTCCTAGAAGGCACCACACACCCTCTACACTGCCTAGAACAAAATTCACTGCAACTACACCTCTTGAGCAGAAGCGTGCCATTATGGAATTAAAGCAAAAACTTGATTTTAGTTCTGATGGAACTGGAGAGATGCCACCTGTAGCCAAGAAGGGCCATCAGAACTATGCTCTGAATAACAAGGATTATGCCATGCCAGGAAGTGCCATGTTTGACCCTGCTGACCATGCGAGTATCTCAAGCATTGCAGACAGTATAGGCCCTGTCGGCAGTACCATGGGCAGTGAGATATCAGAAAATGTTGATGTCAAGAAGATAATGAGTAGATTATCACAAGTGAGGGAGTACTTGCAGCAAGCAACAACAATGTTCCTGTCCTTGTCAGTATCAGAAACTGCTGAGCCATCAAAAGCAGCACAGTTGGAAAAGTTATCAACTCTGATTAAACAGCTCAAAATTCAGGAACAAGGTTACATTGACCTCTTGCAAAGAACTTTGGTGGTGGATGGCACTTCAGAAATAACAGACATGACAGTCAATGGCAGTCACATGTCTTTGGATCTCCAGAAAGAGGAATCATCTGAAGCACAAGCAACTCAGCTTGAACAACTGCAGCAACAGCAAGACTTGCTGAAGAAAATCATTGATCAGCAGAAGCAGCTTGCCGAGTTGAAGAAACGTCAGTCCACCCTCTTGGCAATGCAAGCCCAAGCTGAGCGAATGGTGCACGATGCAGAGTCCCATGCTGTCTCCAAGGGTGGCGTCAATGGGATGGTAGGTGTACAGCGGCAAAACAACGAAGCCAGTCCTCCTCAACCGAGTCGCAGTAACGTGGGAAAAGAGACTTCAACAACCGCCCGATTCCTGCAGCGTGCAGTCCCAGAAGAGGAAGGGGAGAAGAAGCAAAAGCTTGAGCGCGATCTTGCTTCTCTTGTTCACAAGAAGGAAGAGATGGAAAAGTTGATCTCTGTTTTGAAGGGCCTCAAGGAAGCTCATAACGATGAAGCTGCTATGCAAAGTGTACTACGGCCGCCACCAGCATCCAACGATGTGGGGAGTTACGGGGGGCACGAAGGCCACTTTTCAGATCGTCAGTCGTCCATAATGTCAGAAGCAACTTCAGACTTCGATGATTCCAGAGAGAAGCTCAAGAAACTTGCTGAGGTAAGAGAGCGGCTAGACGAGCTGAGGTCTATTGTGGCTGAGTACGAGCAAGGTGCGCCCAACGATGGTTTGCAGAGTTCACAACGGGACAATCGGCTAGTTGCTCTCACGCGTCCATCTGGAGGCCCCTCGTTCCCGCAGCAGTGTTTAACAAGGGATGGCGCCAGGCCAAAAGACCCAAACCGCGACATCCGGATAATGAACAGGACACGAGAGGACACCATTCCCTTCACCGGCTACGATAATCGAAGACAGCAGCCACGGCCTCATGCTGCGCCGAGGAATCTCAACTGGAACCCAGGGAGCGAGATGGAATCCGGGGTCCGAGACGATGGCCCCGGAGGCAGTGACCTTAGAAACATCGATTTTTCTAGAGCAGTGAAGGCCACAGATCCTGACTTGCAGTCAAAGATTGGCCAATTGCAAGAAGCCAGGGAGAGATTGGTTTCATTTCAAACTTCGTCTGCGGCGAACAATTCCTACGGCAATATCTATGATCTTGGCAAAGTTCAAATCAAACCCCAGACTAAGACGAGCGTGCCTCGCGATGCTCAGGAGTTGGATTTGACCAGCAGGTCTTCCCGATCGAATTCCATGTATGATCTTGATTGGCAAGAAGATCCAGAGCTGTTAGAGAAGATACGGAAACTTCAAATTGCCAAGGAAAAGCTGAAGAAGTTGCAAGACCTCGTCAGCGTGATCCAGCAGGACGCAGTGCCGGGGCTGCCTGTCAGTGACCTTCTGGAGTTGTCATTCAATGCGGATGGCATAGGCAGCAGCAAGGCAGAGAGCAACGACGAGGAAAGTGGTATGAAGAAAGACCCGGATGGTGAAGACGCATCCGAGATCAGAAGTGACGTAAGCGAGTGTGCTTCGCAAACTAGTTTAGCGGAAGGGGACGTCGAGGCTGTGTCTGATGGTGACGAGGCTTCAGAAAGAGGATTGCTTAACAACCGACAGGATGAGGGCTCCTCCTTATACGAGGCAGAAGCTGCTTATCAAGAAAAGCGTAAGATGCAGAGAGAGGAGCTTGATAAGCTGCTAAGGGAAAGGCAGAAGCTGATTGAAGTCCAGCAGCAGCTGTCTCAGCTGACCAAGAAGTCATTGACCGCATCAGCAGAGACCCAGACAGTATCTCCTCGGGAAAAGCCACACGTCACTACTGAGAAGACACAGGATAAATCCCCGGAGAAAGAGAAGTTGACCTTATCAGGACACAGCAAGGTTTTTTCATCGCTGGTTCCGGGTCAGCGGGACAAGTACAAAGGAACAGGGGCCAGGCCCAAGCTGTTAAAACGGGCATCCAACATGTCGGTAGAGCCGCAAGTAGGATCCAGGGGAGATTCCGAGATCTCGTATAGTCCAAGGCATCCTAGATCCGTTGATACGCTGCCTGCTGCACCTTTGCCCAACAACCCCCTGGTCGTTTCCGAACTTCGCCGCCAGCGTGACATGTTTGAGCAAAAGAAAAAGCAGCGCTTTGCCGAGAAACACCAGATGAAGCAGATCTCGGACAACGCTTCTGAGGGGGGTACGTTTTCTATAAGAAGCGACATAGACGAGGGGGTTGGCGTCAGCATGCTGAGTGCCGAAGTGACAACGGCCACCTGGGGTGGTTCTACAGAACAGAGCAGCACAGAGGAAGACTCTGCAGTGGGAGAGGAGGAGGACAGAGAGATGGGCAACGCTTATGAAGATGGAATGCCACAGGTCGAAGAAGAGGAGGAAGAAGAAGATCAGTCTGAAAGAGAGGCAGCACGTGATAGGCTCTTCCAAAGAAAAGTGCGTCCGAAAAAGGTGCCTAGAAGGTCGAAGTTAATGACAAGGTGGTCCGACAGTGACCGACCGGCGGGGAAGAAGCGAAAACTCAACGGAAAGAAAAGTGATCTAAGCAGATCTGCAGGCTCTGTGTCCTGGGCTATGAATGTGTCGCCCGATGGAGGGAGAAACAGACCTCGGCAGCAAAATCTGACACCTGCCCATCGGCTTATGAGGGATATCAGGCACGAAGACGACCCGCAAACCACTTCCTTGCTTACCGTATGGGAGCAGCAGTGCCGGCACTTGCACCAGCAGCTGGCAAGCAATACGTCGCTAACCGGGTCACTGCTGCGCAACCAGCAAACTTTGCTAACTATGTTGCAGTCTCAAATGAACCCAGCTGCAAGGGGATCAGACACCTCCGGTTTCTTGGGACATGATATAGGACCATTGTCAGATAATGTCCCGGGGGACAACCGGCAATCTACCGAAAGATACAGTCGTTTGGCACAGTCCATCTCAACATGCCAGGGCCAGCTTAGCGCCCACCACGAAGAACTCAAAGCTTTGCGGGGCATGTTGTTTAATCACATGCCACACGCTACAGCGGATTTCACAGGAAACAGGAGACCGACTGACAGTTCAAAGAGCGGAGATAGCAGTGGCCAGGGAACTGTTCATTTTGGTCAAATCTGGTCGCCAGGAGGCACGTCTTACCCTTTTCCCCAGCCTAGATGGAGGACTTCTCCTCAGGGAGATGCCAGCCAGGTCAAGGACAAGACACCCTACCCTTTCGCAAAGGCAAACCAAAGTGTTACTCATGAGGCAGACACGCAGACGGAAACGTCGCTGTTCGACGAGCAGTTTCACACGTATTGTCACGACTACTCGTTGTTTGGCGAACAGCAAGCGGATGAAGAGGTGTCCAAGAGTGCACAGAATGGACAGAATTTTTCACCGTTTCGTTTTTATTCTCCCAGTGAGATTACTGCCAAAAAAGGTGACAACGATGCAAATGTCGTTGGAAGGGGACGACCAGAGGTCAGCACAGAGAGGGATGTTAACAGTGAAACCAACCCCTACAACCCTATGGCGTATGGAGGTGCCGCTGCTGTTTCCGTTGCGCCCGCCACCTCTGGTGCCAATGATCAGGAAGTCCTCGCCACCTCGACCGTACCTTCGCCTTCCAAGTCGCTAGCACTGGCTACTTTAGCGGGCAGACAAAAATCCATCTGGCCCTCCTTTCTAGCACAAAGCGCAGACCAAACAGGCAATGCTTCTGAAGCTTCGTCCTTGTATACCAGCAGTTTTCCTGGTCACCGGGAGTCAGCCGAGAGACTGAATCAAATGGAAAAGGACAATGAGGAGAACCGAGCCGCGGAAAGAGCGGATAAGGTGTCCGACGCAACCAGCAATTTTTCACTTTTCGAAGCTTTGCGGGACTCAATCTATAACGAGGTCGCGACCTTGATTGCGATGAATGAATCACGCCCACACTATCTGATCGAACTATTTCGCGAATTGCAGCTGTTGACGTCAGATTATTTAAGGCAGCGGGCATTGTATGCTCTACAGGATTTGGTTACTCGTTATCTAACGGACGAAAACGTTGTCTCAGACGATGCGATTGCACAGGAGAAATTTAATTACAAACAATGGGCTGCATCAGCATCTGAGCATACTCCCAGTGAAAGCCTGGTTACTTCAGACGACGAGGAGCAGAAGGCGTTAGAAGCGCTGTCCAGTCAAATTCGCAACAATGACATCTACGATTACGCAGAGGCAGCTGAAACAGGAAGCACGTTGTCGACACCCACTTCCAGTGCTGATCATCCCTTTGCTAGTGACCAGCTAGGCGACACAGTGATTAATCTTGATGAGGCTTTGCAGAAAATGAAGCTGTGCGAGGAAAACATGGCGCAGACACAGAAGGCATTGGAGAGCATGCGCTTTAGTGACTATCGTGGATCCCTCTTTGGTGCCGCCCGAGATAGGTTCAGGCAGGCCGTTGACGTCATGAGCAATAGCTCAGCAGGAGACTTTGCCAGTGAGACCTCTTCCGATGTACCGCATGCCTCGGTCGATACTCAGAAGCTGGACAAGCAAATCAAGGCAGTTGTCATGGAATTGGTCCCCTTCTTCAACGAAAGGACCGAGACCACGGTGACTTCGGATTTTTTGGAGGAAATGAAAGACCTAATTCTGTCACTTGCCAGACAACGTGAACCTCATTCAGACAGAGAGGAATTCGGTCGCTTTTTCCACAAGCAGTTGGAGTCTATTTTGTATGACTCGTTGACGAAGTTTACTGGCAAGAAGCTGAATGAGTGTGGTGAAGACATCATCACAGATGTATCAGAGATCCTATTCAATGAGCTAGCATTCTTTAAATTAATGCAGGACCTCGACAGAACACCCAGAAGAAACCCATCCGCGGCTTGGGCGGAGTCGAACAGGCAGTCCTCAAGCAACAATGGTCATGAATCTCGCAATATTTCAGTAGAACGTGGAGCACAGAACAACCAAGATTTGGTCATTCAAGACTACGAGACGAGTGAAACGAGTTCTGTTGCACCGGATGTGGAGCTTGTGCACAATCTTCGTGATGAAGGCGAGAGAACAGACGAAAGCGAGGAAAATAGGGGAGGGATGAGGGCTGAGGGAGGGTATTTTCAGGACAATGAAGTTGACCAACCGGACAGTGCAGGGTCAGAAGATTCTGAGGACGAGGCTGAATCGTCTCGACAATACGTCAATTTGGAACTCTCCGTGAGTGAAAGCAGACCGGTCAACAGCACTGGAAGCGGGGAAGAGGACATGGAAGAGGACCGGCCCACTTTTTCCGCGGGTCGTGCCAATGCGGTGAGGTCCCCGGGTTCGTTGAGCCAGGAATCCCCGAATCCGGATAACGATGCTGATGAAAGCCAGACGGAGAGTCAGGGAGATGACACGCGGCCGGAAAGTGACGGTGCCGGCGATGATGTCGACCAGGTACACGTTGACGGTGACGAACGGTCTGCGTACGACAACGGAGCTGCTGAAGAAGATGAACGAGAGGAGATGGTACGAGACATGGAGCTCGGTAGACAGTACAGCGAAGAGGAGACGGCGCAGGTGGATGGGGAAGTGGAAGGAGCAGTGGCATGTGAAACAGATGACGCTCTCAACAATAATGGAAGCCATGACTTGGACGTCGACGAGGGCGAAGTCACCATGGATGACCTTCCTATTAAGCTTACTGGGCTGACAGAGGCCGACCTTCAAGCCCGCATTGCCTCGGAGCAAGAACAGAATGAGAGCCCTGCTGCTATTCTCGCAAACTTAGATGGCGTTGATGAGTTGGCACCGAATGAAATAAGAGAACCAGGGCACACTCCAAATGGATATTGA

Transcript

g3296.t2

Protein

g3296.t2

MASASSLPDFEAILQRGAVTEPRPLVRSRRGDEVNEISLSAAVKSATQGKKVASVKNKSNRPVTEKMKTSSSKRSGGSKYDDGVSAGSSTSGPPRRHHTPSTLPRTKFTATTPLEQKRAIMELKQKLDFSSDGTGEMPPVAKKGHQNYALNNKDYAMPGSAMFDPADHASISSIADSIGPVGSTMGSEISENVDVKKIMSRLSQVREYLQQATTMFLSLSVSETAEPSKAAQLEKLSTLIKQLKIQEQGYIDLLQRTLVVDGTSEITDMTVNGSHMSLDLQKEESSEAQATQLEQLQQQQDLLKKIIDQQKQLAELKKRQSTLLAMQAQAERMVHDAESHAVSKGGVNGMVGVQRQNNEASPPQPSRSNVGKETSTTARFLQRAVPEEEGEKKQKLERDLASLVHKKEEMEKLISVLKGLKEAHNDEAAMQSVLRPPPASNDVGSYGGHEGHFSDRQSSIMSEATSDFDDSREKLKKLAEVRERLDELRSIVAEYEQGAPNDGLQSSQRDNRLVALTRPSGGPSFPQQCLTRDGARPKDPNRDIRIMNRTREDTIPFTGYDNRRQQPRPHAAPRNLNWNPGSEMESGVRDDGPGGSDLRNIDFSRAVKATDPDLQSKIGQLQEARERLVSFQTSSAANNSYGNIYDLGKVQIKPQTKTSVPRDAQELDLTSRSSRSNSMYDLDWQEDPELLEKIRKLQIAKEKLKKLQDLVSVIQQDAVPGLPVSDLLELSFNADGIGSSKAESNDEESGMKKDPDGEDASEIRSDVSECASQTSLAEGDVEAVSDGDEASERGLLNNRQDEGSSLYEAEAAYQEKRKMQREELDKLLRERQKLIEVQQQLSQLTKKSLTASAETQTVSPREKPHVTTEKTQDKSPEKEKLTLSGHSKVFSSLVPGQRDKYKGTGARPKLLKRASNMSVEPQVGSRGDSEISYSPRHPRSVDTLPAAPLPNNPLVVSELRRQRDMFEQKKKQRFAEKHQMKQISDNASEGGTFSIRSDIDEGVGVSMLSAEVTTATWGGSTEQSSTEEDSAVGEEEDREMGNAYEDGMPQVEEEEEEEDQSEREAARDRLFQRKVRPKKVPRRSKLMTRWSDSDRPAGKKRKLNGKKSDLSRSAGSVSWAMNVSPDGGRNRPRQQNLTPAHRLMRDIRHEDDPQTTSLLTVWEQQCRHLHQQLASNTSLTGSLLRNQQTLLTMLQSQMNPAARGSDTSGFLGHDIGPLSDNVPGDNRQSTERYSRLAQSISTCQGQLSAHHEELKALRGMLFNHMPHATADFTGNRRPTDSSKSGDSSGQGTVHFGQIWSPGGTSYPFPQPRWRTSPQGDASQVKDKTPYPFAKANQSVTHEADTQTETSLFDEQFHTYCHDYSLFGEQQADEEVSKSAQNGQNFSPFRFYSPSEITAKKGDNDANVVGRGRPEVSTERDVNSETNPYNPMAYGGAAAVSVAPATSGANDQEVLATSTVPSPSKSLALATLAGRQKSIWPSFLAQSADQTGNASEASSLYTSSFPGHRESAERLNQMEKDNEENRAAERADKVSDATSNFSLFEALRDSIYNEVATLIAMNESRPHYLIELFRELQLLTSDYLRQRALYALQDLVTRYLTDENVVSDDAIAQEKFNYKQWAASASEHTPSESLVTSDDEEQKALEALSSQIRNNDIYDYAEAAETGSTLSTPTSSADHPFASDQLGDTVINLDEALQKMKLCEENMAQTQKALESMRFSDYRGSLFGAARDRFRQAVDVMSNSSAGDFASETSSDVPHASVDTQKLDKQIKAVVMELVPFFNERTETTVTSDFLEEMKDLILSLARQREPHSDREEFGRFFHKQLESILYDSLTKFTGKKLNECGEDIITDVSEILFNELAFFKLMQDLDRTPRRNPSAAWAESNRQSSSNNGHESRNISVERGAQNNQDLVIQDYETSETSSVAPDVELVHNLRDEGERTDESEENRGGMRAEGGYFQDNEVDQPDSAGSEDSEDEAESSRQYVNLELSVSESRPVNSTGSGEEDMEEDRPTFSAGRANAVRSPGSLSQESPNPDNDADESQTESQGDDTRPESDGAGDDVDQVHVDGDERSAYDNGAAEEDEREEMVRDMELGRQYSEEETAQVDGEVEGAVACETDDALNNNGSHDLDVDEGEVTMDDLPIKLTGLTEADLQARIASEQEQNESPAAILANLDGVDELAPNEIREPGHTPNGY*

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15717 all species →	PCM1_C	Pericentriolar material 1 C terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031446 all species →	Domain	Pericentriolar material 1 protein, C-terminal	Interproscan
IPR024138 all species →	Family	Pericentriolar material 1 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14164 all species →	PERICENTRIOLAR MATERIAL 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0034451 all species →	Cellular Component	centriolar satellite	Interproscan
GO:0034454 all species →	Biological Process	microtubule anchoring at centrosome	Interproscan
GO:0035735 all species →	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0071539 all species →	Biological Process	protein localization to centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16537	PCM1; pericentriolar material 1 protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.