Gene detail

Detailed information of g33.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBX7146670.1, ABC transporter substrate-binding protein [Alphaproteobacteria bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23847	Dipeptide-binding protein OS=Escherichia coli (strain K12) OX=83333 GN=dppA PE=1 SV=1
A5VU91	Putative ABC transporter peptide-binding protein BOV_A0352 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) OX=444178 GN=BOV_A0352 PE=3 SV=1
Q577J8	Putative ABC transporter peptide-binding protein BruAb2_0792 OS=Brucella abortus biovar 1 (strain 9-941) OX=262698 GN=BruAb2_0792 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000013 (this species only)
Orthogroup (gene family)	OG0000968 (this species only)
Orthogroup (gene family)	OG0000999 (this species only)
Orthogroup (gene family)	OG0004430 (this species only)
Orthogroup (gene family)	OG0004681 (this species only)
Orthogroup (gene family)	OG0008682 (this species only)
Orthogroup (gene family)	OG0008890 (this species only)
Orthogroup (gene family)	OG0014801 (this species only)
Orthogroup (gene family)	OG0016401 (this species only)
Orthogroup (gene family)	OG0017771 (this species only)
Orthogroup (gene family)	OG0048324 (this species only)
Orthogroup (gene family)	OG0048341 (this species only)
Orthogroup (gene family)	OG0171072 (this species only)
Orthogroup (gene family)	OG0173385 (this species only)
Orthogroup (gene family)	OG0173719 (this species only)
Ubiquitin family	E1\|ThiF\|ThiF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF16177 all species →	ACAS_N	Acetyl-coenzyme A synthetase N-terminus	Family	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF00899 all species →	ThiF	ThiF family	Domain	Interproscan
PF10268 all species →	Tmemb_161AB	Predicted transmembrane protein 161AB	Family	Interproscan
PF12576 all species →	DUF3754	Protein of unknown function (DUF3754)	Family	Interproscan
PF00496 all species →	SBP_bac_5	Bacterial extracellular solute-binding proteins, family 5 Middle	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR047170 all species →	Family	Tyrosine-protein phosphatase non-receptor type 12/18/22	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR031053 all species →	Family	Chromodomain-helicase-DNA-binding protein 1-like	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR032387 all species →	Domain	Acetyl-coenzyme A synthetase, N-terminal domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR000594 all species →	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR014929 all species →	Domain	E2 binding	Interproscan
IPR030468 all species →	Domain	NEDD8-activating enzyme E1 catalytic subunit, N-terminal domain	Interproscan
IPR037078 all species →	Homologous_superfamily	NEDD8-activating enzyme E1 catalytic subunit, C-terminal	Interproscan
IPR045886 all species →	Family	ThiF/MoeB/HesA family	Interproscan
IPR019395 all species →	Family	Transmembrane protein 161A/B	Interproscan
IPR023318 all species →	Homologous_superfamily	Ubiquitin activating enzyme, alpha domain superfamily	Interproscan
IPR033127 all species →	Active_site	Ubiquitin-activating enzyme E1, Cys active site	Interproscan
IPR035985 all species →	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR022227 all species →	Family	Protein of unknown function DUF3754	Interproscan
IPR039424 all species →	Family	Solute-binding protein family 5	Interproscan
IPR030678 all species →	Family	Peptide/nickel binding protein, MppA-type	Interproscan
IPR000914 all species →	Domain	Solute-binding protein family 5 domain	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45983 all species →	TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED	Interproscan
PTHR47157 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24095 all species →	ACETYL-COENZYME A SYNTHETASE	Interproscan
PTHR10953 all species →	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan
PTHR16095 all species →	TRANSMEMBRANE PROTEIN 143 FAMILY MEMBER	Interproscan
PTHR30290 all species →	PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0004726 all species →	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035335 all species →	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0003987 all species →	Molecular Function	acetate-CoA ligase activity	Interproscan
GO:0006085 all species →	Biological Process	acetyl-CoA biosynthetic process	Interproscan
GO:0019781 all species →	Molecular Function	NEDD8 activating enzyme activity	Interproscan
GO:0045116 all species →	Biological Process	protein neddylation	Interproscan
GO:0032446 all species →	Biological Process	protein modification by small protein conjugation	Interproscan
GO:0008641 all species →	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0015833 all species →	Biological Process	peptide transport	Interproscan
GO:0030288 all species →	Cellular Component	outer membrane-bounded periplasmic space	Interproscan
GO:1904680 all species →	Molecular Function	peptide transmembrane transporter activity	Interproscan
GO:0043190 all species →	Cellular Component	ATP-binding cassette (ABC) transporter complex	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01895	ACSS1_2, acs; acetyl-CoA synthetase	EC:6.2.1.1	Lipid biosynthesis proteins	ko01004	deepkoala
K02035	ABC.PE.S; peptide/nickel transport system substrate-binding protein	-	Transporters	ko02000	deepkoala
K10686	UBA3, UBE1C; NEDD8-activating enzyme E1	EC:6.2.1.64	Ubiquitin system	ko04121	deepkoala
K20092	CHD1L; chromodomain-helicase-DNA-binding protein 1-like	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.