Detailed information of g332.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_074906833.1, phage tail tube protein [Nitrosomonas communis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5XIE3Large ribosomal subunit protein uL11m OS=Rattus norvegicus OX=10116 GN=Mrpl11 PE=2 SV=1
Q9Y3B7Large ribosomal subunit protein uL11m OS=Homo sapiens OX=9606 GN=MRPL11 PE=1 SV=1
Q2YDI0Large ribosomal subunit protein uL11m OS=Bos taurus OX=9913 GN=MRPL11 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18906Phage_tube_2Phage tail tube proteinFamilyInterproscan
PF03946Ribosomal_L11_NRibosomal protein L11, N-terminal domainDomainInterproscan
PF00298Ribosomal_L11Ribosomal protein L11, RNA binding domainDomainInterproscan
PF02815MIRMIR domainDomainInterproscan
PF07412GemininGemininFamilyInterproscan
PF05063MT-A70MT-A70 FamilyInterproscan
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF18346SH3_15Mind bomb SH3 repeat domainDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF06701MIB_HERC2Mib_herc2DomainInterproscan
PF06220zf-U1U1 zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044000FamilyPhage tail tube protein-likeInterproscan
IPR053738Homologous_superfamilyLambda phage major capsid assemblyInterproscan
IPR036769Homologous_superfamilyLarge ribosomal subunit protein uL11, C-terminal domain superfamilyInterproscan
IPR000911FamilyRibosomal protein uL11Interproscan
IPR020784DomainLarge ribosomal subunit protein uL11, N-terminalInterproscan
IPR036796Homologous_superfamilyLarge ribosomal subunit protein uL11, N-terminal domain superfamilyInterproscan
IPR020783DomainLarge ribosomal subunit protein uL11, C-terminalInterproscan
IPR016093DomainMIR motifInterproscan
IPR036300Homologous_superfamilyMir domain superfamilyInterproscan
IPR022786FamilyGeminin/MulticilinInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR007757FamilyMT-A70-likeInterproscan
IPR025848FamilyN6-adenosine-methyltransferase MT-A70-likeInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR040847DomainMind bomb, SH3 repeat domainInterproscan
IPR037252Homologous_superfamilyMib/herc2 domain superfamilyInterproscan
IPR010606DomainMib-herc2Interproscan
IPR017340FamilyU1 small nuclear ribonucleoprotein CInterproscan
IPR013085DomainU1-C, C2H2-type zinc fingerInterproscan
IPR003604DomainMatrin/U1-C-like, C2H2-type zinc fingerInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR000690DomainMatrin/U1-C, C2H2-type zinc fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR1166160S RIBOSOMAL PROTEIN L12Interproscan
PTHR46809STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEINInterproscan
PTHR12829N6-ADENOSINE-METHYLTRANSFERASEInterproscan
PTHR24202E3 UBIQUITIN-PROTEIN LIGASE MIB2Interproscan
PTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN CInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0005762Cellular Componentmitochondrial large ribosomal subunitInterproscan
GO:0015934Cellular Componentlarge ribosomal subunitInterproscan
GO:0070180Molecular Functionlarge ribosomal subunit rRNA bindingInterproscan
GO:0006275Biological Processregulation of DNA replicationInterproscan
GO:0001734Molecular FunctionmRNA m(6)A methyltransferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0036396Cellular ComponentRNA N6-methyladenosine methyltransferase complexInterproscan
GO:0080009Biological Processobsolete mRNA methylationInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0016422Molecular FunctionmRNA (2'-O-methyladenosine-N6-)-methyltransferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006897Biological ProcessendocytosisInterproscan
GO:0007219Biological ProcessNotch signaling pathwayInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0000395Biological ProcessmRNA 5'-splice site recognitionInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0030627Molecular Functionpre-mRNA 5'-splice site bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11095SNRPC; U1 small nuclear ribonucleoprotein C-Messenger RNA biogenesisko03019deepkoala
Ubiquitin systemko04121deepkoala
Messenger RNA biogenesisko03019deepkoala
Spliceosomeko03041deepkoala

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