Gene detail

Detailed information of g3332.t1 in Montipora capitata

Genomic Location: Sc0000057:39946...57863
NR annotation: XP_044178944.1, EGF and laminin G domain-containing protein [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3332.t1

atgatcaagctgtatgttgaaggaaaattattgctcttccggttcttgttttcagcatctcgtcattttactggtgagggttacttggagtataaaataccacaacgggatacactcataaactctgacaaggatgaattacgtattgagttcagcacagtacaaccctctggtcttttgtttcatgccagaagctctggaggacaatatgcagactacatcacccttgaagttgttgggggcagattaaggttctctgtgcgttatggaaggtcagattacagtgaagaggaaagccatgaggtgtatttaggagaaaaccttgatgatggcaaatcccattatgttgaagtgaatcacaatgaattggttacaaccatttaccttgataaaacatctgatttggaaaaagcagagcatacatttaacaccaagtatttcaaactagaaattgatgttgctatctatattggtggtgcagcagattttaaatctcttctttcagtgaaatcaaatgctcttttcatgggttgcatgacggaggtgattttcaggaaattgaagccaatccctgaaaaagagataaattttctggagaaagatgtggtgaccacttaccctagttccatgaacaaagagtgtgtaacatcagcttttgcaccatttacatttagtgcagatgattctagttttgtctgttcagtcactggcctgtctgcagcagattcactgagtggacgtttcatgttccgtacttacaaggacagtggggttctcttgaaacaagtcaacggtgtgaacaaatttgaaatttcatacgggaagcgtgatgttgatttgaaagttaatgttggaaacactgaatcccttttaaacgtcaattaccaaagcgagttgacaactgtgaacagtggcaattggcatcaggtgcagtttgtaatctctggaagttcatttgagttaagagttgggtccaagacagacgttcgtgttcctactgtgtccgtgacaagtggtttcttcaagggtgatgtgactgcaggtggatttgtgggttgcatgaatgagcttgagatcaacaacaagctttgcaaaccaaatgaaagatcacaaaccaacaaagtggagatgaacggctgtaacatcactgatttttgcatcttttctccctgcttacacaaagggatttgtgctcaaacaggaaagacctttacttgtggctgttccggaacaggatacgacaaagcaaatgatcctctctcggtttgccagttttctgaatttcattccacttgtgaaattctgggggaaaatctgggcaatcagaggcttggagatcgtaagtataccctagattttgatggatcaggacctatcaagcctattaaggctttttgcaactttacggctgatccaccaaccacgcaggtgatctctaggaacattggtatcaagcttactccaagtagtcaagccaaatcacatagaatatcttacgaaccaagcttagaggcggctcaagctttggccagacggagtgaatggtgttatcagcacgttgactttggatgcaggaaagcaaagttactcgacgtggacagtgatcagacgtcgggcgtttgggtgtcatctgatggattataccggaattattggggtggtgctgaaaaagggtcgaagtcatgtgcttgtggcagtgagaacccaaactcttgcgtgaatcgcaataaaaaatgtaactgtgatgctggggaaaacaaatggaacagcgacgaagggtacttgaattcaacaactctacttcctgttttggaggttgtatttgagggtgtcgtaccaaatacggaggcaaactactcagtaggccatctatattgtgcaggtgaaaccagcaacactgcaacatttgtaaatgaagacggcgttattgaactcgaggcgtggtctccgccatcagatggtgttatctcatttttcttcaagacaccatatgacaaaggaatattgttgtacaatggtgtcgatggcaaagatttcttccagcttgaaatcgttaataaaactacagttggtctcttgtatgacatcggcaatggtgtccggaaaattgaactgagtttgaaagaccagcaagtaaatgatcggtcctggcactatgtcgtaatctatcgcaacatgaaagtctttgggttgaaacttgataatcaagaggcccagaacgaaaatccattatttatgaagagaaacttggacgtgaacaaagtgaacaaactccatgttggaagttacccttttgacatgacgaaaggtttcgtgggctgtattcgtggactggacattaatggtgaagttcaggatttaagtcagctggctggcaagtttgaatatgtggctagtggctgtgggaaagcatgcgaaaacaatgcttgcgagaataatggaaaatgcctcgacaactataatgtttacttatgtgattgcagcaaaacgccgttttacgggtacttctgtcataaagataagggtgcatcgtttgtcaatcaagacagtgagttaatctacacctttcccacgaaaatggatgtttccagttttgacattgtggttggtttcaaggtggggcaagacgaatcatgcagaggtgacataattcgacttgaaaacgaagataattccgaaaatttccggctttcgctcatcaacgggaaagaacttcaatttgactttgagcgtccaggaggtgctggctcttttacaattgatccaccaccaactcaggatttctgtgatggtattcatacctttgccttaagtcgccgatttaaggaagtcaattacactgtggatggtcacaaaaggcccaaagacgagaatcagaggttggatgggctttttgtgggtatgaataagataacaattggcaagcaaggggacggcggtttcaagggttgtataaccggtgttaaggtcacgcgacagggaattccttccaagtcggaaacagtggaacccatcaaggcatggttgtatgatgacaagacggatggatttaccgttacaggtatctcgcgcaacgacaaggaaaaatgtgctcccgagcccccggtccccgagattcccacaccacgccctgttggcggaggacccagtgtgtcgacatcccggagtaccactgatccaaaattgaaagccgaggatgacaacaaaaccgctattattgttatcgttgtgctcatcctggttcttcttttggttgttttggttattgtcatttactggtactgggctcgtcacaagggggaataccacacccacgaggacgatgaagaactgaagggtactgacccgtacatcgacctcacagcaccaagaaaaccacagggagaggaaactgaaaagaagaaagagtggtacatttga

Transcript

g3332.t1

ATGATCAAGCTGTAtgttgaaggaaaattattgcTCTTCCGGTTCTTGTTTTCAGCATCTCGTCATTTTACTGGTGAGGGTTACTTGGAGTATAAAATACCACAACGGGATACACTCATAAACTCTGACAAGGATGAATTACGTATTGAGTTCAGCACAGTACAACCCTCTGGTCTTTTGTTTCATGCCAGAAGCTCTGGAGGACAATATGCAGACTACATCACCCTTGAAGTTGTTGGGGGCAGATTAAGGTTCTCTGTGCGTTATGGAAGGTCAGATTACAGTGAAGAGGAAAGCCATGAGGTGTATTTAGGAGAAAACCTTGATGATGGCAAATCCCATTATGTTGAAGTGAATCACAATGAATTGGTTACAACCATTTACCTTGATAAAACATCTGATTTGGAAAAAGCAGAGCATACATTTAACACCAAGTATTTCAAACTAGAAATTGATGTTGCTATCTATATTGGTGGTGCAGCAGATTTTAAATCTCTTCTTTCAGTGAAATCAAATGCTCTTTTCATGGGTTGCATGACGGAGGTGATTTTCAGGAAATTGAAGCCAATCCCTGAAAAAGAGATAAATTTTCTGGAGAAAGATGTGGTGACCACTTACCCTAGTTCCATGAACAAAGAGTGTGTAACATCAGCTTTTGCACCATTTACATTTAGTGCAGATGATTCTAGTTTTGTCTGTTCAGTCACTGGCCTGTCTGCAGCAGATTCACTGAGTGGACGTTTCATGTTCCGTACTTACAAGGACAGTGGGGTTCTCTTGAAACAAGTCAACGGTGtgaacaaatttgaaatttcatacGGGAAGCGTGATGTTGATTTGAAAGTTAATGTTGGAAACACTGAATCCCTTTTAAACGTCAATTACCAAAGCGAGTTGACAACTGTGAACAGTGGCAATTGGCATCAGGTGCAGTTTGTAATCTCTGGAAGTTCATTTGAGTTAAGAGTTGGGTCCAAGACAGACGTTCGTGTTCCTACTGTGTCCGTGACAAGTGGTTTCTTCAAGGGTGATGTGACTGCAGGTGGATTTGTGGGTTGCATGAATGAGCTTGAGATCAACAACAAGCTTTGCAAACCAAATGAAAGATCACAAACCAACAAAGTGGAGATGAACGGCTGTAACATCACTGATTTTTGCATCTTTTCTCCCTGCTTACACAAAGGGATTTGTGCTCAAACAGGAAAGACCTTTACTTGTGGCTGTTCCGGAACAGGATACGACAAAGCAAATGATCCTCTCTCGGTTTGCCAGTTTTCTGAATTTCATTCCACTTGTGAAATTCTGGGGGAAAATCTGGGCAATCAGAGGCTTGGAGATCGTAAGTATACCCTAGATTTTGATGGATCAGGACCTATCAAGCCTATTAAGGCTTTTTGCAACTTTACGGCTGATCCACCAACCACGCAGGTGATCTCTAGGAACATTGGTATCAAGCTTACTCCAAGTAGTCAAGCCAAATCACATAGAATATCTTACGAACCAAGCTTAGAGGCGGCTCAAGCTTTGGCCAGACGGAGTGAATGGTGTTATCAGCACGTTGACTTTGGATGCAGGAAAGCAAAGTTACTCGACGTGGACAGTGATCAGACGTCGGGCGTTTGGGTGTCATCTGATGGATTATACCGGAATTATTGGGGTGGTGCTGAAAAAGGGTCGAAGTCATGTGCTTGTGGCAGTGAGAACCCAAACTCTTGCGTGAATCGCAATAAAAAATGTAACTGTGATGCTGGGGAAAACAAATGGAACAGCGACGAAGGGTACTTGAATTCAACAACTCTACTTCCTGTTTTGGAGGTTGTATTTGAGGGTGTCGTACCAAATACGGAGGCAAACTACTCAGTAGGCCATCTATATTGTGCAGGTGAAACCAGCAACACTGCAACATTTGTAAATGAAGACGGCGTTATTGAACTCGAGGCGTGGTCTCCGCCATCAGATGGTGTTATCTCATTTTTCTTCAAGACACCATATGACAAAGGAATATTGTTGTACAATGGTGTCGATGGCAAAGATTTCTTCCAGCTTGAAATCGTTAATAAAACTACAGTTGGTCTCTTGTATGACATCGGCAATGGTGTCCGGAAAATTGAACTGAGTTTGAAAGACCAGCAAGTAAATGATCGGTCCTGGCACTATGTCGTAATCTATCGCAACATGAAAGTCTTTGGGTTGAAACTTGATAATCAAGAGGCCCAGAACGAAAATCCATTATTTATGAAGAGAAACTTGGACGTGAACAAAGTGAACAAACTCCATGTTGGAAGTTACCCTTTTGACATGACGAAAGGTTTCGTGGGCTGTATTCGTGGACTGGACATTAATGGTGAAGTTCAGGATTTAAGTCAGCTGGCTGGCAAGTTTGAATATGTGGCTAGTGGCTGTGGGAAAGCATGCGAAAACAATGCTTGCGAGAATAATGGAAAATGCCTCGACAACTATAATGTTTACTTATGTGATTGCAGCAAAACGCCGTTTTACGGGTACTTCTGTCATAAAGATAAGGGTGCATCGTTTGTCAATCAAGACAGTGAGTTAATCTACACCTTTCCCACGAAAATGGATGTTTCCAGTTTTGACATTGTGGTTGGTTTCAAGGTGGGGCAAGACGAATCATGCAGAGGTGACATAATTCGACTTGAAAACGAAGATAATTCCGAAAATTTCCGGCTTTCGCTCATCAACGGGAAAGAACTTCAATTTGACTTTGAGCGTCCAGGAGGTGCTGGCTCTTTTACAATTGATCCACCACCAACTCAGGATTTCTGTGATGGTATTCATACCTTTGCCTTAAGTCGCCGATTTAAGGAAGTCAATTACACTGTGGATGGTCACAAAAGGCCCAAAGACGAGAATCAGAGGTTGGATGGGCTTTTTGTGGGTATGAATAAGATAACAATTGGCAAGCAAGGGGACGGCGGTTTCAAGGGTTGTATAACCGGTGTTAAGGTCACGCGACAGGGAATTCCTTCCAAGTCGGAAACAGTGGAACCCATCAAGGCATGGTTGTATGATGACAAGACGGATGGATTTACCGTTACAGGTATCTCGCGCAACGACAAGGAAAAATGTGCTCCCGAGCCCCCGGTCCCCGAGATTCCCACACCACGCCCTGTTGGCGGAGGACCCAGTGTGTCGACATCCCGGAGTACCACTGATCCAAAATTGAAAGCCGAGGATGACAACAAAACCGCTATTATTGTTATCGTTGTGCTCATCCTGGTTCTTCTTTTGGTTGTTTTGGTTATTGTCATTTACTGGTACTGGGCTCGTCACAAGGGGGAATACCACACCCACGAGGACGATGAAGAACTGAAGGGTACTGACCCGTACATCGACCTCACAGCACCAAGAAAACCACAGGGAGAGGAAACTGAAAAGAAGAAAGAGTGGTACATTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8UU78	EGF and laminin G domain-containing protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q9CPW0	Contactin-associated protein-like 2 OS=Mus musculus OX=10090 GN=Cntnap2 PE=1 SV=2
Q9UHC6	Contactin-associated protein-like 2 OS=Homo sapiens OX=9606 GN=CNTNAP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000572 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050372 all species →	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR003585 all species →	Domain	Neurexin/syndecan/glycophorin C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036 all species →	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for g3332.t1 in Montipora capitata.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07380	CNTNAP2; contactin associated protein-like 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g3332.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

93.5Max TPM

38.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	38.48	93.51
whole organisms · low pH treatment	15	15	36.03	60.60
whole organisms · extra low pH treatment pH treatment	12	12	42.76	88.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	93.51
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	78.19
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	65.54
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	59.36
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	41.49
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	40.35
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	40.34
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	38.68
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	37.27
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	33.80
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	31.72
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	31.14
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	30.23
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	27.61
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	27.30
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	26.12
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	25.70
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	24.10
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	20.72
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	17.76
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	17.06
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	60.60
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	55.96
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	48.26
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	42.42
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	41.18
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	40.43
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	36.64
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	36.34
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	29.22
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	28.30
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	26.96
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	24.75
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	24.30
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	22.58
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	22.44
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	88.98
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	87.17
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	65.91
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	41.33
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	38.79
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	33.51
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	33.36
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	32.73
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	25.55
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	23.62
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	21.70
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	20.52

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.