Gene detail

Detailed information of g33342.t1.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3020448.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

g33342.t1

ATGGCGTATACGAATGAAGGTCGAGGTTCTTTTGATGCAACAGCAACAGGCGTGTTTTATACCCAACAACACATCAACTTCAATGATTTGGTGATGAACAAAGACACTGATTCGAAGGATCAAGAAGAATTTTATCCCCAGTTTATTCAGTATTATCAAGAGACAGACTCTCCAAGACCCAGTGTAGATATTTCTAGTTATGGAAGAAGAGGTCCGAGAGCAAGTTTAGCAAGTTTATCGCACACCTTAAAGCGTGGAAAAGGAAAAATTATCAAAAGTACAGAGAATTTTTTTGGCCTGGGAGACTGTGAAGAACAACATGAAAATCTTCAAAGGAAATGGACTCAAAGAAGGAAACGACACTATCATAAGCGCTATGGTGCTCTGGTGGATGAAGACACAGTGGATGCAGCATTGCCACAAGGCAAGCGAGGTACAGCAGGAAGCGTCAGCAGCTATCAAAGCTCACGCCAAATGCAAGCTGACCCTAATCTTGTGCGGACAATGAGCAGAAGAGAGTCTGTGGCAAGCCTGGCTtggaaaaaagtgaaaaagatGAAAGATGAACCTGGGggtTTTAAATCGCCAGGAAAGGCTCAGCCAGCATGCATGCTGCTAGAGGCTGGGCGTAGCTTTTCGCCAGCTGTGATGTCCCAGACGGATGATGATGAAGTGGACAGTGCATTTCATCCTGAAGGAGTGCGTGGGATTGATGAAGGCGCCATAGACGATGAAGTGTTCTTCAGTTTTGCACCCGATAGGCAGAGAAGAAGGAAAGAAAGGCCACCAGTTTTGCCTGAAATCAAAGAGACTGAAGAAAAAGAAGCCCGAGATGAAGTGGAAGGGCCTCCTGCACCacgaCCACCCATTCGTAGCACTCGAGGACAAAGAATTGCAGACAGACCTCGCGTTACAAATGCTAACCGTCGAGAGTATGGCAAGGGGATGGTTGGTAGATGGTTAAACAGAACTATCAAGCGCAAGCGTTTGACAAGCACTGTCAAAAAGCAGATGGAGTCACTTTCTGATCACAGGCCTTATTTCACTTATTGGATCTCATTTGTACAAACAGTTGTACTTATTGTCGGCTTGGCTGTTTATCGCTTTGCACCCATTGGTTTTACAGCGAGAACAATAGAAGGAGTGTATGACAAAAGTGTGACTGGGACACTTGTGGCAAGCAAGGAGTCTCGAGAAGATCCTGAGAACTTCTGGATTGGTCCTAATCAGGCAGGTTTAATCAAAATGGGGGCTAAGTTTGCTCCATGCATGCGTACTGACAAAAAATTGTTAGAAACACTTGTTGAGGAGAGGAGAAATGAAAGTGAGACAGGATGCTGTATAAAGTCTGATGGGTCAGGGTGCATTCAGACATCAAAGGAAAAGTGTTCTAAAGCATTTGCCTATTTCATCAAGTATTCCAAAGATGATAACAAAACAAGAGTTGTCTGTGGACAAGATCCAAGAACATGTTTGGACCCGCCTGATGTAGAACCAGATAGATGGGACCCAGTAGATATCACCAAATGGAAGAAGTGTGAAAAAAACAAGCCGAATATATCCCCTGTGGACAATCCACATATGACATGTGAGATCACTGGCCGGCCATGCTGCATGGGAAATGAAGCCAAATGCAAAATTGTCAGCAAAGGAGAGTGTGATTTCTATAATGGCACCTATCATGAGAATAACACACTGTGCTCTCAGgTGGATTGCCTTAGCAACACTTGTGGAATGTTGGATTTTCATCGCATGGATAAGCCTGACCAAGTGTATCGTCTGTGGATGGCAATATTTGCCCATGCAGGGATTATTCATCTTTGCTGCACCTTGATCTTCCACTTCACAATCATGCGTGACTTGGAAAAGATGGCCGGCTGGCTTCGGCTGTCAATCATCTATATATTTAGCGGGATCGGTGGCTATCTTTACAGTGCAATCCTTCTTCCTTACCAGGCTGAGGTCGGCCCTTCAGGCTCCATCTTTGGTGTGGTGGCCTGTCTGTTTGTTGAACTGTTTCAGAGTTGGCAGATCATAGCCAGGCCGTTTACAGCTCTGGCGAAGCTGTGTGGTATAGTTTTACTTCTCTTGCTTATAGGCCTTCTTCCTTACGTCGACAACTTCGCGCACATGATCGGTTTTGTGTTTGGGTTTTTACTTGCGTTCATCTTCCTTCCTTACGTGTGGTTTGGCGAGTTCGACAGGCGACGTAAACAGATCCAGATCATTGTGTGTTTTGCGCTGGTTATTGTGCTGTATGTGATAGGATTTATGGTGTTTTACATCTATCAGGGTTCCAGTTGTACCGGTTGCCAAATCTTGAACTGCATTCCATTTACTGAGGATTTCTGCACGCGGTACAACGACGGACAAAACTTGAAACCGAGATCAAGTTAG

Transcript

g33342.t1

Protein

Uniprot

Uniprot term	Description
Q6PIX5	Inactive rhomboid protein 1 OS=Mus musculus OX=10090 GN=Rhbdf1 PE=1 SV=2
Q499S9	Inactive rhomboid protein 1 OS=Rattus norvegicus OX=10116 GN=Rhbdf1 PE=2 SV=1
A9L8T6	Inactive rhomboid protein 1 OS=Papio anubis OX=9555 GN=RHBDF1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01694	Rhomboid	Rhomboid family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035952	Homologous_superfamily	Rhomboid-like superfamily	Interproscan
IPR022764	Domain	Peptidase S54, rhomboid domain	Interproscan
IPR051512	Family	Inactive Rhomboid	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45965	INACTIVE RHOMBOID PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0042058	Biological Process	regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0050708	Biological Process	regulation of protein secretion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27588	RHBDF; inactive rhomboid protein	-	TNF signaling pathway	ko04668	deepkoala