Genomic Location: not available for this species
NR annotation: WP_108402824.1, phage tail protein [Limnohabitans curvus]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q96RW7 | Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2 |
| A2AJ76 | Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1 |
| Q8NDA2 | Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000026 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000143 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000311 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000964 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001226 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002881 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003637 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0008289 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012673 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0061688 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07679 all species → | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| PF00090 all species → | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| PF13927 all species → | Ig_3 | Immunoglobulin domain | Domain | Interproscan |
| PF13895 all species → | Ig_2 | Immunoglobulin domain | Domain | Interproscan |
| PF14291 all species → | DUF4371 | Domain of unknown function (DUF4371) | Family | Interproscan |
| PF02162 all species → | XYPPX | XYPPX repeat (two copies) | Repeat | Interproscan |
| PF00397 all species → | WW | WW domain | Domain | Interproscan |
| PF13550 all species → | Phage-tail_3 | Putative phage tail protein | Domain | Interproscan |
| PF01172 all species → | SBDS | Shwachman-Bodian-Diamond syndrome (SBDS) protein | Family | Interproscan |
| PF04916 all species → | Phospholip_B | Phospholipase B | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000884 all species → | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR036179 all species → | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR003598 all species → | Domain | Immunoglobulin subtype 2 | Interproscan |
| IPR003599 all species → | Domain | Immunoglobulin subtype | Interproscan |
| IPR013098 all species → | Domain | Immunoglobulin I-set | Interproscan |
| IPR007110 all species → | Domain | Immunoglobulin-like domain | Interproscan |
| IPR036383 all species → | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR050958 all species → | Family | Cell Adhesion and Cytoskeletal Organization | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR025398 all species → | Domain | Domain of unknown function DUF4371 | Interproscan |
| IPR006031 all species → | Repeat | XYPPX repeat | Interproscan |
| IPR001202 all species → | Domain | WW domain | Interproscan |
| IPR053076 all species → | Family | WW domain-containing protein | Interproscan |
| IPR036020 all species → | Homologous_superfamily | WW domain superfamily | Interproscan |
| IPR032876 all species → | Domain | Tip attachment protein J | Interproscan |
| IPR036786 all species → | Homologous_superfamily | Ribosome maturation protein SBDS, N-terminal domain superfamily | Interproscan |
| IPR039100 all species → | Family | Ribosome maturation protein Sdo1/SBDS-like | Interproscan |
| IPR019783 all species → | Domain | Ribosome maturation protein SDO1/SBDS, N-terminal | Interproscan |
| IPR043040 all species → | Homologous_superfamily | Phospholipase B-like, domain 1 | Interproscan |
| IPR007000 all species → | Family | Phospholipase B-like | Interproscan |
| IPR043041 all species → | Homologous_superfamily | Phospholipase B-like, domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45080 all species → | CONTACTIN 5 | Interproscan |
| PTHR45749 all species → | - | Interproscan |
| PTHR46697 all species → | FORMIN-BINDING PROTEIN 4 | Interproscan |
| PTHR10927 all species → | RIBOSOME MATURATION PROTEIN SBDS | Interproscan |
| PTHR12370 all species → | PHOSPHOLIPASE B-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007156 all species → | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0008046 all species → | Molecular Function | axon guidance receptor activity | Interproscan |
| GO:0030424 all species → | Cellular Component | axon | Interproscan |
| GO:0043025 all species → | Cellular Component | neuronal cell body | Interproscan |
| GO:0050808 all species → | Biological Process | synapse organization | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004620 all species → | Molecular Function | phospholipase activity | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0009395 all species → | Biological Process | phospholipid catabolic process | Interproscan |
g334.t1.Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
