Gene detail

Detailed information of g337.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCK5274977.1, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [Alphaproteobacteria bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RHI5	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=sucB PE=3 SV=1
Q92J43	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=sucB PE=3 SV=1
Q4UKI7	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=sucB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000043 (this species only)
Orthogroup (gene family)	OG0000043 (this species only)
Orthogroup (gene family)	OG0000065 (this species only)
Orthogroup (gene family)	OG0000444 (this species only)
Orthogroup (gene family)	OG0001159 (this species only)
Orthogroup (gene family)	OG0001417 (this species only)
Orthogroup (gene family)	OG0001777 (this species only)
Orthogroup (gene family)	OG0002134 (this species only)
Orthogroup (gene family)	OG0004517 (this species only)
Orthogroup (gene family)	OG0005565 (this species only)
Orthogroup (gene family)	OG0011462 (this species only)
Orthogroup (gene family)	OG0018998 (this species only)
Orthogroup (gene family)	OG0032584 (this species only)
Orthogroup (gene family)	OG0059506 (this species only)
Orthogroup (gene family)	OG0174583 (this species only)
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan
PF02223 all species →	Thymidylate_kin	Thymidylate kinase	Domain	Interproscan
PF03067 all species →	LPMO_10	Lytic polysaccharide mono-oxygenase, cellulose-degrading	Domain	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00198 all species →	2-oxoacid_dh	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	Domain	Interproscan
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039430 all species →	Domain	Thymidylate kinase-like domain	Interproscan
IPR018095 all species →	Conserved_site	Thymidylate kinase, conserved site	Interproscan
IPR004302 all species →	Domain	Cellulose/chitin-binding protein, N-terminal	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan
IPR051516 all species →	Family	Histone-lysine N-methyltransferase SETDB	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR050409 all species →	Family	E3 ubiquitin-protein ligase	Interproscan
IPR006255 all species →	Family	Dihydrolipoamide succinyltransferase	Interproscan
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR036625 all species →	Homologous_superfamily	E3-binding domain superfamily	Interproscan
IPR050537 all species →	Family	2-oxoacid dehydrogenase	Interproscan
IPR001078 all species →	Domain	2-oxoacid dehydrogenase acyltransferase, catalytic domain	Interproscan
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR050302 all species →	Family	Rab GTPase-activating TBC domain-containing protein	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10344 all species →	THYMIDYLATE KINASE	Interproscan
PTHR46024 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS	Interproscan
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR11254 all species →	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	Interproscan
PTHR43416 all species →	DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED	Interproscan
PTHR31751 all species →	SI:CH211-108C17.2-RELATED-RELATED	Interproscan
PTHR47219 all species →	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004798 all species →	Molecular Function	thymidylate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006233 all species →	Biological Process	dTDP biosynthetic process	Interproscan
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006227 all species →	Biological Process	dUDP biosynthetic process	Interproscan
GO:0006235 all species →	Biological Process	dTTP biosynthetic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0010629 all species →	Biological Process	negative regulation of gene expression	Interproscan
GO:0046974 all species →	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051567 all species →	Biological Process	obsolete histone H3-K9 methylation	Interproscan
GO:0070828 all species →	Biological Process	heterochromatin organization	Interproscan
GO:0090309 all species →	Biological Process	obsolete positive regulation of DNA methylation-dependent heterochromatin formation	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0061025 all species →	Biological Process	membrane fusion	Interproscan
GO:0004149 all species →	Molecular Function	dihydrolipoyllysine-residue succinyltransferase activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0045252 all species →	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00658	DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)	EC:2.3.1.61	Lipoic acid metabolism	ko00785	deepkoala
K20167	TBC1D14; TBC1 domain family member 14	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.