Gene detail

Detailed information of g338.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAE7405154.1, sucA [Symbiodinium microadriaticum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
B2S877	2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain S19) OX=430066 GN=sucA PE=3 SV=1
Q2YLS2	2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain 2308) OX=359391 GN=sucA PE=3 SV=1
Q57AX5	2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus biovar 1 (strain 9-941) OX=262698 GN=sucA PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07533	BRK	BRK domain	Domain	Interproscan
PF08880	QLQ	QLQ	Domain	Interproscan
PF07529	HSA	HSA domain	Family	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF14619	SnAC	Snf2-ATP coupling, chromatin remodelling complex	Domain	Interproscan
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF01756	ACOX	Acyl-CoA oxidase	Family	Interproscan
PF08442	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF00676	E1_dh	Dehydrogenase E1 component	Family	Interproscan
PF00549	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF16870	OxoGdeHyase_C	2-oxoglutarate dehydrogenase C-terminal	Family	Interproscan
PF17171	GST_C_6	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF17172	GST_N_4	Glutathione S-transferase N-terminal domain	Domain	Interproscan
PF03134	TB2_DP1_HVA22	TB2/DP1, HVA22 family	Family	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006576	Domain	BRK domain	Interproscan
IPR014012	Domain	Helicase/SANT-associated domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan
IPR014978	Domain	Glutamine-Leucine-Glutamine, QLQ	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR037259	Homologous_superfamily	BRK domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029295	Domain	Snf2, ATP coupling domain	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001487	Domain	Bromodomain	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR012258	Family	Acyl-CoA oxidase	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR002655	Domain	Acyl-CoA oxidase, C-terminal	Interproscan
IPR011603	Family	2-oxoglutarate dehydrogenase E1 component	Interproscan
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR013650	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR033847	Conserved_site	ATP-citrate lyase/succinyl-CoA ligase, conserved site	Interproscan
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR001017	Domain	Dehydrogenase, E1 component	Interproscan
IPR005811	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR017866	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR031717	Domain	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR017440	Active_site	ATP-citrate lyase/succinyl-CoA ligase, active site	Interproscan
IPR042179	Homologous_superfamily	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily	Interproscan
IPR033468	Domain	Metaxin, glutathione S-transferase domain	Interproscan
IPR036282	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR050931	Family	Mitochondrial Protein Transport Metaxin	Interproscan
IPR012336	Domain	Thioredoxin-like fold	Interproscan
IPR004345	Family	TB2/DP1/HVA22-related protein	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR039857	Family	Intraflagellar transport protein 122/121 homolog	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan
PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan
PTHR23152	2-OXOGLUTARATE DEHYDROGENASE	Interproscan
PTHR12289	METAXIN RELATED	Interproscan
PTHR12300	HVA22-LIKE PROTEINS	Interproscan
PTHR47526	ATP-DEPENDENT DNA HELICASE	Interproscan
PTHR12764	WD REPEAT DOMAIN-RELATED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003997	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005504	Molecular Function	fatty acid binding	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016402	Molecular Function	pristanoyl-CoA oxidase activity	Interproscan
GO:0033540	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0055088	Biological Process	lipid homeostasis	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0016624	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Interproscan
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0004591	Molecular Function	oxoglutarate dehydrogenase (succinyl-transferring) activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0045252	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0001401	Cellular Component	SAM complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030991	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0061512	Biological Process	protein localization to cilium	Interproscan
GO:0097730	Cellular Component	non-motile cilium	Interproscan
GO:1905515	Biological Process	non-motile cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11647	SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala