Detailed information of g339.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_115936190.1, malate dehydrogenase [Aestuariispira insulae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B7KVX2Malate dehydrogenase OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688) OX=440085 GN=mdh PE=3 SV=1
Q84FY8Malate dehydrogenase OS=Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1) OX=272630 GN=mdh PE=1 SV=2
A9W386Malate dehydrogenase OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=mdh PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyTF_bZIP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF02866Ldh_1_Clactate/malate dehydrogenase, alpha/beta C-terminal domainDomainInterproscan
PF00056Ldh_1_Nlactate/malate dehydrogenase, NAD binding domainDomainInterproscan
PF00854PTR2POT familyFamilyInterproscan
PF000027tm_27 transmembrane receptor (Secretin family)FamilyInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan
PF20210Laa1_Sip1_HTR5Laa1/Sip1/HEATR5 HEAT repeat regionRepeatInterproscan
PF01607CBM_14Chitin binding Peritrophin-A domainDomainInterproscan
PF14670FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF00170bZIP_1bZIP transcription factorCoiled-coilInterproscan
PF02173pKIDpKID domainFamilyInterproscan
PF20700MutatorMutator-like transposaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR011275FamilyMalate dehydrogenase, type 3Interproscan
IPR001557FamilyL-lactate/malate dehydrogenaseInterproscan
IPR015955Homologous_superfamilyLactate dehydrogenase/glycoside hydrolase, family 4, C-terminalInterproscan
IPR022383DomainLactate/malate dehydrogenase, C-terminalInterproscan
IPR001236DomainLactate/malate dehydrogenase, N-terminalInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR000109FamilyProton-dependent oligopeptide transporter familyInterproscan
IPR000832FamilyGPCR, family 2, secretin-likeInterproscan
IPR017983Conserved_siteGPCR, family 2, secretin-like, conserved siteInterproscan
IPR017981DomainGPCR, family 2-like, 7TMInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR051068FamilyMajor Facilitator Superfamily Domain-Containing ProteinInterproscan
IPR040108FamilyLaa1/Sip1/HEATR5Interproscan
IPR036508Homologous_superfamilyChitin binding domain superfamilyInterproscan
IPR046837RepeatLaa1/Sip1/HEATR5-like, HEAT repeat regionInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR002557DomainChitin binding domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR050685FamilyLow-density lipoprotein receptorInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR004827DomainBasic-leucine zipper domainInterproscan
IPR001630FamilycAMP response element binding (CREB) proteinInterproscan
IPR003102DomainCyclic AMP-responsive element-binding protein 1-like, pKIDInterproscan
IPR046347Homologous_superfamilyBasic-leucine zipper domain superfamilyInterproscan
IPR033467DomainTesmin/TSO1-like CXC domainInterproscan
IPR049012DomainMutator-like transposase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR43128L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))Interproscan
PTHR11654OLIGOPEPTIDE TRANSPORTER-RELATEDInterproscan
PTHR12011ADHESION G-PROTEIN COUPLED RECEPTORInterproscan
PTHR23510INNER MEMBRANE TRANSPORT PROTEIN YAJRInterproscan
PTHR21663HYPOTHETICAL HEAT DOMAIN-CONTAININGInterproscan
PTHR24270LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATEDInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR45879CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0019752Biological Processcarboxylic acid metabolic processInterproscan
GO:0004459Molecular FunctionL-lactate dehydrogenase activityInterproscan
GO:0006089Biological Processlactate metabolic processInterproscan
GO:0006090Biological Processpyruvate metabolic processInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007189Biological Processadenylate cyclase-activating G protein-coupled receptor signaling pathwayInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007166Biological Processcell surface receptor signaling pathwayInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0006897Biological ProcessendocytosisInterproscan
GO:0008104Biological Processprotein localizationInterproscan
GO:0030139Cellular Componentendocytic vesicleInterproscan
GO:0042147Biological Processretrograde transport, endosome to GolgiInterproscan
GO:0008061Molecular Functionchitin bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20053VLDLR; very low-density lipoprotein receptor-Cysteine and methionine metabolismko00270deepkoala
Membrane traffickingko04131deepkoala

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