Gene detail

Detailed information of g3396.t1 in Tripedalia maipoensis

Genomic Location: scaffold_14:1465703...1504657
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g3396.t1

ATGCATCCTGAGCAAATGGAGAAGCATGGTAATGCAATGATACTCCAGCTGTTTCTTCTAGGGTGCGTTCTGGTCCGCACAACGTTACCTTCTCGTGGGACATGGTCAACGAACTTGGTTGATGAAGATCCGGTCTTCAGCCCCAGAACTATGACAAACGACCATTCAGTGGTTTCCCTGGAAGGAAAGTGGGAAATTGAATTACTTGAATCCAACAAAACCATGAAACTGCACGGGGAAGTGCCTGGGAATATTTATACGGCGTTGTATCGAGCAAGTCTGATAACTTACCCATATTACGGCGAAAACGATGAGAAATATAGATGGGTTGGCCGCAAGGACTGGAAGTATTCGCGAAATTTTTCAGTATCAAGTGTACTTTTGGGAATGGACACTGTTAACATCATTTTTGAGGGGTTGGATACGGCCTCAAGGATATACATAAATGGGAAGTTCATTGGCCAATCCACCAACATGTTTGTAAAGTACATTTTTTCTGTCAAAGATATTTTAAAGCAAGGAGAGAATTCAGTGGCAATTTACTTCCAGTCCCCTATTCAATATGCCACAGAGGAAAGTTCTTTATTTGAGAAGAAATATGGATACATGGTTCCACCTGTGAGGAGACCATTACATGAGCATGGAGATGAGCATGTGAATTTTATTCGTAAGGAACCATGTTCATTTGGATGGGATTGGGGACCTTCATTTCCAACTGTTGGAATATGGAAATCTGTTTACTTGGAAGCTTGCAATGGTCCCTCTCTAGATTACATTTTGGTAAATTCACTCCAAGATGAAGGGTACTGGAAACTTGAGACTACTCTGATTACTCGCTCGTATAGCTCAGTGCGTGGATATTTATGGAGAATAAACATCGAGGGGCTGGGTTACTCTCAGGCCTTTCCTGCAAATCTGGACGTGGGTGAATCTGCTAGCAAAGTCATCGTGAAGCTTAGCAAGCAGTACAATGTGTCGTTGTGGTGGCCCAGAGGATATGGAAATCAGAGTCTATTCACTCTCAATGTGTCATTGGAGAACGCCGAAGGCGGAGTTGTGGCAGTTCGAAAGATCATGTTTGGATTTAGAACGATTGAACTTGTGGAAGAGAAGATCGAAGGGTCTTCAGGGTTAAGTTTTTATTTCAAGATCAATTCCGTGCCCGTCTTCCTGAAAGGATCCAACTGGATACCTGCAGACTCCTTCAAAGATAACGTCACGGAAGAGCGGGTAAAGAGTATACTCCAATCAGCATATGACGCAAACATGAATGTCTTAAGGGTCTGGGGAGGAGGTGTCTACGAAGATGACTACTTTTATTCAATGGCAGACAAAATGGGAATTCTGATCTGGCATGACTTCATGTTTGCATGTGCCCTATATCCTGCCAACGATTTTTTTCTGAAGAATGTTACCATGGAAATTCGGCATCAGGTTCGGCGTTTACAGCATCACCCCTCCATCCTGTTGTGGAGTGGCAATAACGAAAACGAGGTTGCTCTCAGGCAAGATTGGTACCACGTGTTGAGCCAATTCGAGCGATTCAAGAAAGACTATGACAAGCTCTATATTTCCACGATCAAGAAAGTGGTGGCAGCAGAAGATGGCTCCCGCCCGTTCATCCCCTCATCACCTTCCAATGGGCAAGAATCAGAGAAGGAAGGGGGAATAGCAGCTGACCCACAGAGCCCTCTGTGGGGGGATGTCCACTTTTACGACTATTACGGGGATTGTTTGAACGTCAACACATTTCCTAAGCCGCGTATGGCCACAGAGTATGGGTACCAGTCTTATCCATCCTACGACGTACTACGGCAAATTGCGGAACCATCTGAGCTCGCATGGGACAGCAAACTGATGAAGTACCGACAACACCACGAGAACGGGAATGAACAGATCCAGAACATGATTGAGAAGCATTTTAAGCTGCCGGAACATAAAAATGCAACAGAATACTTCAAGGGAATGATCTACTTGTCCCAGATCATGCAAGCACTGTGCATTAAGCAGGAAACTGAAAATTATCGTCGTATGCGAGGAAATTTAATCAAAGGAATGGGCCACACCATGGGAGCCATGTATTGGCAGCTTAATGACATTTGGCAAGGACCTTCTTGGTCTTCTGTGGAGTATGGCGGTGGTTGGAAGATGCTGCATTATTATGCCAAGGATTTTTTCGCCAACGTGATAGCCAGTGCGTATGAAGACCACGGGAAAGTTTACATCTACGTGATTTCTGATAGGTTCGACAAAATTGATCGTGCGTTGCTGCAGGTCCGTGCCTATACCTGGGAAAGTTTTACGCCTACCTTTAAGAACGAAAGGCATTTGACCATCAATCCTGCTTCCTCGACCTTAGTGGAGACACTAATGACCAACGAAACTTGCCGAGATCCTTCTGAATGCATAATGACGGTGCATGTTGTAGCTGATGGTGCCCCCAGTTTGCCAAGCCCAGTTTTTGTGACGTCTCCAAAGAAAGCTCAGACCATGCGCGACCCTGTACTCAAGATCAAGAGTGTGTCGGCCAGCAGTCAATCCACGTTTAGTATCGAAATTGAGGCTCGTTTCCCAGCTGCTTTTGTTTGGCTCAGCGCCAGTCTCCCTGGCAGGTTCTCTGACAACGGATTTCTTTTGCTGCAGCCGCAAATAGAGATTCTTTTCCAGTCTCCGAAACCAGTGTCATCAGAATTATTTCGGAAGAGCGTACGAATTACCTCGCTTTACAACCTGTACCACTAA

Transcript

g3396.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02837 all species →	Glyco_hydro_2_N	Glycosyl hydrolases family 2, sugar binding domain	Domain	Interproscan
PF17753 all species →	Ig_mannosidase	Ig-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006104 all species →	Domain	Glycosyl hydrolases family 2, sugar binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR050887 all species →	Family	Beta-mannosidase glycosyl hydrolases	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR041625 all species →	Domain	Beta-mannosidase, Ig-fold domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43730 all species →	BETA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004567 all species →	Molecular Function	beta-mannosidase activity	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01192	E3.2.1.25, MANBA, manB; beta-mannosidase	EC:3.2.1.25	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.