Gene detail

Detailed information of g34.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: PIR32414.1, hypothetical protein COV36_04390 [Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_44_7]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O66874	Penicillin-binding protein 1A OS=Aquifex aeolicus (strain VF5) OX=224324 GN=mrcA PE=1 SV=1
Q9KUC0	Penicillin-binding protein 1B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=mrcB PE=3 SV=1
O87579	Penicillin-binding protein 1A OS=Neisseria lactamica OX=486 GN=mrcA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000101 (this species only)
Orthogroup (gene family)	OG0000351 (this species only)
Orthogroup (gene family)	OG0000458 (this species only)
Orthogroup (gene family)	OG0001841 (this species only)
Orthogroup (gene family)	OG0003051 (this species only)
Orthogroup (gene family)	OG0003512 (this species only)
Orthogroup (gene family)	OG0004435 (this species only)
Orthogroup (gene family)	OG0004822 (this species only)
Orthogroup (gene family)	OG0007285 (this species only)
Orthogroup (gene family)	OG0022258 (this species only)
Orthogroup (gene family)	OG0032183 (this species only)
Orthogroup (gene family)	OG0041315 (this species only)
Orthogroup (gene family)	OG0080404 (this species only)
Orthogroup (gene family)	OG0172458 (this species only)
Orthogroup (gene family)	OG0174024 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF07546 all species →	EMI	EMI domain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04114 all species →	Gaa1	Gaa1-like, GPI transamidase component	Family	Interproscan
PF00905 all species →	Transpeptidase	Penicillin binding protein transpeptidase domain	Domain	Interproscan
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039762 all species →	Family	Nonsense-mediated mRNA decay protein Nmd2/UPF2	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR051941 all species →	Family	Blood Group Antigen-Binding Lectin	Interproscan
IPR006585 all species →	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR011489 all species →	Domain	EMI domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR007246 all species →	Family	GPI transamidase component Gaa1	Interproscan
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR050396 all species →	Family	Glycosyltransferase 51/Transpeptidase	Interproscan
IPR001460 all species →	Domain	Penicillin-binding protein, transpeptidase	Interproscan
IPR042448 all species →	Family	E3 ubiquitin-protein ligase CCNB1IP1	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR024169 all species →	Family	Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12839 all species →	NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2	Interproscan
PTHR45713 all species →	FTP DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan
PTHR13304 all species →	GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN	Interproscan
PTHR32282 all species →	BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED	Interproscan
PTHR14305 all species →	E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1	Interproscan
PTHR42778 all species →	2-AMINOETHYLPHOSPHONATE--PYRUVATE TRANSAMINASE	Interproscan
PTHR43243 all species →	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan
PTHR11370 all species →	DNA-REPAIR PROTEIN XRCC1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005844 all species →	Cellular Component	obsolete polysome	Interproscan
GO:0035145 all species →	Cellular Component	exon-exon junction complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0008658 all species →	Molecular Function	penicillin binding	Interproscan
GO:0008955 all species →	Molecular Function	peptidoglycan glycosyltransferase activity	Interproscan
GO:0009252 all species →	Biological Process	peptidoglycan biosynthetic process	Interproscan
GO:0046677 all species →	Biological Process	response to antibiotic	Interproscan
GO:0000795 all species →	Cellular Component	synaptonemal complex	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13864	SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.