Detailed information of g34.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PIR32414.1, hypothetical protein COV36_04390 [Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_44_7]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O66874Penicillin-binding protein 1A OS=Aquifex aeolicus (strain VF5) OX=224324 GN=mrcA PE=1 SV=1
Q9KUC0Penicillin-binding protein 1B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=mrcB PE=3 SV=1
O87579Penicillin-binding protein 1A OS=Neisseria lactamica OX=486 GN=mrcA PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF07546EMIEMI domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF04114Gaa1Gaa1-like, GPI transamidase component FamilyInterproscan
PF00905TranspeptidasePenicillin binding protein transpeptidase domainDomainInterproscan
PF00266Aminotran_5Aminotransferase class-VDomainInterproscan
PF13520AA_permease_2Amino acid permeaseFamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF16589BRCT_2BRCT domain, a BRCA1 C-terminus domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039762FamilyNonsense-mediated mRNA decay protein Nmd2/UPF2Interproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR051941FamilyBlood Group Antigen-Binding LectinInterproscan
IPR006585DomainFucolectin tachylectin-4 pentraxin-1Interproscan
IPR011489DomainEMI domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR007246FamilyGPI transamidase component Gaa1Interproscan
IPR012338Homologous_superfamilyBeta-lactamase/transpeptidase-likeInterproscan
IPR050396FamilyGlycosyltransferase 51/TranspeptidaseInterproscan
IPR001460DomainPenicillin-binding protein, transpeptidaseInterproscan
IPR042448FamilyE3 ubiquitin-protein ligase CCNB1IP1Interproscan
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR000192DomainAminotransferase class V domainInterproscan
IPR024169FamilySerine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminaseInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR002293FamilyAmino acid/polyamine transporter IInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR001357DomainBRCT domainInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2Interproscan
PTHR45713FTP DOMAIN-CONTAINING PROTEINInterproscan
PTHR24023COLLAGEN ALPHAInterproscan
PTHR13304GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEINInterproscan
PTHR32282BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATEDInterproscan
PTHR14305E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1Interproscan
PTHR427782-AMINOETHYLPHOSPHONATE--PYRUVATE TRANSAMINASEInterproscan
PTHR43243INNER MEMBRANE TRANSPORTER YGJI-RELATEDInterproscan
PTHR11370DNA-REPAIR PROTEIN XRCC1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005844Cellular Componentobsolete polysomeInterproscan
GO:0035145Cellular Componentexon-exon junction complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0042765Cellular ComponentGPI-anchor transamidase complexInterproscan
GO:0016255Biological Processattachment of GPI anchor to proteinInterproscan
GO:0008658Molecular Functionpenicillin bindingInterproscan
GO:0008955Molecular Functionpeptidoglycan glycosyltransferase activityInterproscan
GO:0009252Biological Processpeptidoglycan biosynthetic processInterproscan
GO:0046677Biological Processresponse to antibioticInterproscan
GO:0000795Cellular Componentsynaptonemal complexInterproscan
GO:0007131Biological Processreciprocal meiotic recombinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006865Biological Processamino acid transportInterproscan
GO:0015171Molecular Functionamino acid transmembrane transporter activityInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006284Biological Processbase-excision repairInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13864SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2-Transportersko02000deepkoala

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